miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33598 3' -48.4 NC_007605.1 + 12769 0.66 0.99867
Target:  5'- -cUGGGGgcGGUCCuuGAUCCugcgccGGGCg -3'
miRNA:   3'- aaAUUCCaaCCAGG--UUAGGua----UCCGa -5'
33598 3' -48.4 NC_007605.1 + 171172 0.66 0.99867
Target:  5'- --gGGGGUcggGGUCCGcgggcUCCGgGGGCUg -3'
miRNA:   3'- aaaUUCCAa--CCAGGUu----AGGUaUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 170112 0.66 0.99867
Target:  5'- --gGGGGUcggGGUCCGcgggcUCCGgGGGCUg -3'
miRNA:   3'- aaaUUCCAa--CCAGGUu----AGGUaUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 169575 0.66 0.99867
Target:  5'- --gGGGGUcggGGUCCGcgggcUCCGgGGGCUg -3'
miRNA:   3'- aaaUUCCAa--CCAGGUu----AGGUaUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 51233 0.66 0.998385
Target:  5'- --gGAGGUaGGagacagCCAGUCCcUGGGCc -3'
miRNA:   3'- aaaUUCCAaCCa-----GGUUAGGuAUCCGa -5'
33598 3' -48.4 NC_007605.1 + 171251 0.68 0.994589
Target:  5'- --aAAGGUgGGUCCucAAUCCuccauguUAGGCa -3'
miRNA:   3'- aaaUUCCAaCCAGG--UUAGGu------AUCCGa -5'
33598 3' -48.4 NC_007605.1 + 157076 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 154007 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 150938 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 147869 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 144800 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 141731 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 138663 0.68 0.992577
Target:  5'- ---cGGGUUGGUCCAGggccUUCAcuucggucuccccUAGGCUu -3'
miRNA:   3'- aaauUCCAACCAGGUU----AGGU-------------AUCCGA- -5'
33598 3' -48.4 NC_007605.1 + 104765 0.69 0.99155
Target:  5'- -----aGUUGGUCCAggGUCCAggagaAGGCUc -3'
miRNA:   3'- aaauucCAACCAGGU--UAGGUa----UCCGA- -5'
33598 3' -48.4 NC_007605.1 + 51189 0.7 0.97677
Target:  5'- -aUGGGGgcGG-CCAAUCCcgGGGUa -3'
miRNA:   3'- aaAUUCCaaCCaGGUUAGGuaUCCGa -5'
33598 3' -48.4 NC_007605.1 + 139890 1.05 0.023616
Target:  5'- cUUUAAGGUUGGUCCAAUCCAUAGGCUu -3'
miRNA:   3'- -AAAUUCCAACCAGGUUAGGUAUCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.