Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33598 | 5' | -54.8 | NC_007605.1 | + | 141719 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 153995 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 150926 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 138651 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 33728 | 0.66 | 0.943173 |
Target: 5'- ---uCCCGGGGAU-GGACaacugcccuUGGCCg-- -3' miRNA: 3'- uuuuGGGCCCCUAgCCUG---------AUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 147857 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 144788 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 157064 | 0.66 | 0.943173 |
Target: 5'- gGGGGCCCGGgccGGGUUGGuCcagGGCCUUc -3' miRNA: 3'- -UUUUGGGCC---CCUAGCCuGa--UCGGAAu -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 142462 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 141545 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 141443 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 141850 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 141952 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 141035 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 140933 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 140831 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 140729 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 142156 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 142258 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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33598 | 5' | -54.8 | NC_007605.1 | + | 142564 | 0.66 | 0.938438 |
Target: 5'- uGGAGCUCGGGGggCGGccgGgUGGCCc-- -3' miRNA: 3'- -UUUUGGGCCCCuaGCC---UgAUCGGaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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