miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33598 5' -54.8 NC_007605.1 + 12724 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 15793 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 18862 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 21931 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 24999 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 28068 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 31137 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 33728 0.66 0.943173
Target:  5'- ---uCCCGGGGAU-GGACaacugcccuUGGCCg-- -3'
miRNA:   3'- uuuuGGGCCCCUAgCCUG---------AUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 34206 0.66 0.938438
Target:  5'- cAGACCCGGGucUCGG-CcAGCCg-- -3'
miRNA:   3'- uUUUGGGCCCcuAGCCuGaUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 34592 0.73 0.592789
Target:  5'- --uGCCCGGGGGUgGaGGCUGcGCCUg- -3'
miRNA:   3'- uuuUGGGCCCCUAgC-CUGAU-CGGAau -5'
33598 5' -54.8 NC_007605.1 + 36691 0.71 0.716873
Target:  5'- uGAAACCCGGGu-UCGGGCacGCCUUc -3'
miRNA:   3'- -UUUUGGGCCCcuAGCCUGauCGGAAu -5'
33598 5' -54.8 NC_007605.1 + 69400 0.67 0.884759
Target:  5'- --uGCCCGuGGGAUCuG-CUGGCCa-- -3'
miRNA:   3'- uuuUGGGC-CCCUAGcCuGAUCGGaau -5'
33598 5' -54.8 NC_007605.1 + 88988 0.7 0.766302
Target:  5'- --cACUCGGGGGUCcgaGGGCggGGCCUg- -3'
miRNA:   3'- uuuUGGGCCCCUAG---CCUGa-UCGGAau -5'
33598 5' -54.8 NC_007605.1 + 103578 0.66 0.917029
Target:  5'- -cAGCCCGGGG---GGACacggAGCCUg- -3'
miRNA:   3'- uuUUGGGCCCCuagCCUGa---UCGGAau -5'
33598 5' -54.8 NC_007605.1 + 105230 0.67 0.884759
Target:  5'- gAGAACCCGGGuGAcggCGGugUagaGGCCc-- -3'
miRNA:   3'- -UUUUGGGCCC-CUa--GCCugA---UCGGaau -5'
33598 5' -54.8 NC_007605.1 + 123421 0.68 0.862592
Target:  5'- cGAAucuCCCGGGGAUCGaGcucGCUGGCgUg- -3'
miRNA:   3'- -UUUu--GGGCCCCUAGC-C---UGAUCGgAau -5'
33598 5' -54.8 NC_007605.1 + 125706 0.66 0.938438
Target:  5'- ---cUCCGGGaGAUCaGGACgagGGCCg-- -3'
miRNA:   3'- uuuuGGGCCC-CUAG-CCUGa--UCGGaau -5'
33598 5' -54.8 NC_007605.1 + 136389 0.85 0.132968
Target:  5'- --cGCCCGGGGGUCGGGCUGGgCCg-- -3'
miRNA:   3'- uuuUGGGCCCCUAGCCUGAUC-GGaau -5'
33598 5' -54.8 NC_007605.1 + 137098 0.76 0.444331
Target:  5'- uGAAGCCCGGGGAagGGGCgaggaaccGGCCUc- -3'
miRNA:   3'- -UUUUGGGCCCCUagCCUGa-------UCGGAau -5'
33598 5' -54.8 NC_007605.1 + 137404 0.66 0.917029
Target:  5'- cAGGCgCGGGGccgGUCGGcucgGCUGGCCg-- -3'
miRNA:   3'- uUUUGgGCCCC---UAGCC----UGAUCGGaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.