miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33599 3' -53.5 NC_007605.1 + 74595 0.66 0.968733
Target:  5'- -gGGCUcuGGCucuuUGGCCgGCCCAGGa -3'
miRNA:   3'- caCCGAu-CUGcau-ACCGGaUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 160789 0.66 0.965553
Target:  5'- gGUGGCcAGACGgcgcuUGcGUCUGCCCc-- -3'
miRNA:   3'- -CACCGaUCUGCau---AC-CGGAUGGGuuc -5'
33599 3' -53.5 NC_007605.1 + 49144 0.66 0.965223
Target:  5'- -gGGCUgccgucucuaucAGACGcguUAUGGCacgccggCUGCCCAAGc -3'
miRNA:   3'- caCCGA------------UCUGC---AUACCG-------GAUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 106437 0.66 0.962153
Target:  5'- -aGGUUGGcgGCGUucAUGGCCUcGCCCu-- -3'
miRNA:   3'- caCCGAUC--UGCA--UACCGGA-UGGGuuc -5'
33599 3' -53.5 NC_007605.1 + 7925 0.66 0.962153
Target:  5'- -gGGCUAGAUcccucuGCCUACCUggGg -3'
miRNA:   3'- caCCGAUCUGcauac-CGGAUGGGuuC- -5'
33599 3' -53.5 NC_007605.1 + 154422 0.66 0.958525
Target:  5'- -gGGCUGGAUGacgGUGGCC--CCCuGGu -3'
miRNA:   3'- caCCGAUCUGCa--UACCGGauGGGuUC- -5'
33599 3' -53.5 NC_007605.1 + 144375 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 115864 0.66 0.958525
Target:  5'- -gGGcCUGGcCgGUGUGGCCUcgGCCCcAGg -3'
miRNA:   3'- caCC-GAUCuG-CAUACCGGA--UGGGuUC- -5'
33599 3' -53.5 NC_007605.1 + 138237 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 141306 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 156651 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 150513 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 153582 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 147444 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 4054 0.67 0.952238
Target:  5'- cGUGGcCUGGGCGUGaagcugaccuuuggcUcGGCCUccugcCCCGAGa -3'
miRNA:   3'- -CACC-GAUCUGCAU---------------A-CCGGAu----GGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 122952 0.67 0.946238
Target:  5'- -cGGCcAGGCGcaucagGGCCUGCuCUAGGg -3'
miRNA:   3'- caCCGaUCUGCaua---CCGGAUG-GGUUC- -5'
33599 3' -53.5 NC_007605.1 + 92086 0.67 0.946238
Target:  5'- cGUGGCUGGA-GUA-GGag-GCCCGGGg -3'
miRNA:   3'- -CACCGAUCUgCAUaCCggaUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 10997 0.67 0.946238
Target:  5'- cGUGGCUgcGGugGUGcgcaacgccGGCCUGCuggCCGAGc -3'
miRNA:   3'- -CACCGA--UCugCAUa--------CCGGAUG---GGUUC- -5'
33599 3' -53.5 NC_007605.1 + 103021 0.67 0.938796
Target:  5'- aGUGGCUGGGaauggcaggcgagggUGUcucUGGCCUugCCGGa -3'
miRNA:   3'- -CACCGAUCU---------------GCAu--ACCGGAugGGUUc -5'
33599 3' -53.5 NC_007605.1 + 159433 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.