Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 140230 | 1.09 | 0.00495 |
Target: 5'- uGUGGCUAGACGUAUGGCCUACCCAAGa -3' miRNA: 3'- -CACCGAUCUGCAUACCGGAUGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 54360 | 0.74 | 0.651275 |
Target: 5'- -aGGCUAGGCGUccGGC-UACUCGGGg -3' miRNA: 3'- caCCGAUCUGCAuaCCGgAUGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 33918 | 0.73 | 0.682407 |
Target: 5'- -cGGCUGGGC---UGGCCgGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGaUGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 68225 | 0.72 | 0.753096 |
Target: 5'- -aGGCUcaGGACGUGggGGCCguugagGCCCAc- -3' miRNA: 3'- caCCGA--UCUGCAUa-CCGGa-----UGGGUuc -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 98368 | 0.71 | 0.791271 |
Target: 5'- -cGGCUgucuAGACGcgugGGCCU-CCCAGGg -3' miRNA: 3'- caCCGA----UCUGCaua-CCGGAuGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 30849 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 27780 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 24711 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 21642 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 18573 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 15504 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 12435 | 0.71 | 0.809502 |
Target: 5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3' miRNA: 3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 57851 | 0.7 | 0.827066 |
Target: 5'- cGUGGCUGGACGga-GGaCgauaGCCCAGGc -3' miRNA: 3'- -CACCGAUCUGCauaCCgGa---UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 31357 | 0.7 | 0.843894 |
Target: 5'- aUGcCUGGAagaaucAUGGCCUACCCGAGa -3' miRNA: 3'- cACcGAUCUgca---UACCGGAUGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 18378 | 0.69 | 0.882351 |
Target: 5'- -gGGCgagaaAGACGgagAUGGCCgaggACCCGGc -3' miRNA: 3'- caCCGa----UCUGCa--UACCGGa---UGGGUUc -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 73488 | 0.68 | 0.926451 |
Target: 5'- cUGGgUAGACG-GUGGCCUGaguCCgCAGGc -3' miRNA: 3'- cACCgAUCUGCaUACCGGAU---GG-GUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 115753 | 0.68 | 0.926451 |
Target: 5'- aUGGCUAGGcCGUccGGCagcaUGcCCCGAGc -3' miRNA: 3'- cACCGAUCU-GCAuaCCGg---AU-GGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 144088 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 137950 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
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33599 | 3' | -53.5 | NC_007605.1 | + | 141019 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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