miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33599 3' -53.5 NC_007605.1 + 4054 0.67 0.952238
Target:  5'- cGUGGcCUGGGCGUGaagcugaccuuuggcUcGGCCUccugcCCCGAGa -3'
miRNA:   3'- -CACC-GAUCUGCAU---------------A-CCGGAu----GGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 7925 0.66 0.962153
Target:  5'- -gGGCUAGAUcccucuGCCUACCUggGg -3'
miRNA:   3'- caCCGAUCUGcauac-CGGAUGGGuuC- -5'
33599 3' -53.5 NC_007605.1 + 10997 0.67 0.946238
Target:  5'- cGUGGCUgcGGugGUGcgcaacgccGGCCUGCuggCCGAGc -3'
miRNA:   3'- -CACCGA--UCugCAUa--------CCGGAUG---GGUUC- -5'
33599 3' -53.5 NC_007605.1 + 12435 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 15504 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 18378 0.69 0.882351
Target:  5'- -gGGCgagaaAGACGgagAUGGCCgaggACCCGGc -3'
miRNA:   3'- caCCGa----UCUGCa--UACCGGa---UGGGUUc -5'
33599 3' -53.5 NC_007605.1 + 18573 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 21642 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 24711 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 27780 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 30849 0.71 0.809502
Target:  5'- -cGGCUGGGC---UGGCCgaGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGa-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 31357 0.7 0.843894
Target:  5'- aUGcCUGGAagaaucAUGGCCUACCCGAGa -3'
miRNA:   3'- cACcGAUCUgca---UACCGGAUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 33918 0.73 0.682407
Target:  5'- -cGGCUGGGC---UGGCCgGCCCGGGu -3'
miRNA:   3'- caCCGAUCUGcauACCGGaUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 49144 0.66 0.965223
Target:  5'- -gGGCUgccgucucuaucAGACGcguUAUGGCacgccggCUGCCCAAGc -3'
miRNA:   3'- caCCGA------------UCUGC---AUACCG-------GAUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 54360 0.74 0.651275
Target:  5'- -aGGCUAGGCGUccGGC-UACUCGGGg -3'
miRNA:   3'- caCCGAUCUGCAuaCCGgAUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 57851 0.7 0.827066
Target:  5'- cGUGGCUGGACGga-GGaCgauaGCCCAGGc -3'
miRNA:   3'- -CACCGAUCUGCauaCCgGa---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 68225 0.72 0.753096
Target:  5'- -aGGCUcaGGACGUGggGGCCguugagGCCCAc- -3'
miRNA:   3'- caCCGA--UCUGCAUa-CCGGa-----UGGGUuc -5'
33599 3' -53.5 NC_007605.1 + 73488 0.68 0.926451
Target:  5'- cUGGgUAGACG-GUGGCCUGaguCCgCAGGc -3'
miRNA:   3'- cACCgAUCUGCaUACCGGAU---GG-GUUC- -5'
33599 3' -53.5 NC_007605.1 + 74595 0.66 0.968733
Target:  5'- -gGGCUcuGGCucuuUGGCCgGCCCAGGa -3'
miRNA:   3'- caCCGAu-CUGcau-ACCGGaUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 92086 0.67 0.946238
Target:  5'- cGUGGCUGGA-GUA-GGag-GCCCGGGg -3'
miRNA:   3'- -CACCGAUCUgCAUaCCggaUGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.