miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33599 3' -53.5 NC_007605.1 + 103021 0.67 0.938796
Target:  5'- aGUGGCUGGGaauggcaggcgagggUGUcucUGGCCUugCCGGa -3'
miRNA:   3'- -CACCGAUCU---------------GCAu--ACCGGAugGGUUc -5'
33599 3' -53.5 NC_007605.1 + 10997 0.67 0.946238
Target:  5'- cGUGGCUgcGGugGUGcgcaacgccGGCCUGCuggCCGAGc -3'
miRNA:   3'- -CACCGA--UCugCAUa--------CCGGAUG---GGUUC- -5'
33599 3' -53.5 NC_007605.1 + 138237 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 141306 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 144375 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 147444 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 150513 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 153582 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 156651 0.66 0.958525
Target:  5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3'
miRNA:   3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 156364 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 153295 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 57851 0.7 0.827066
Target:  5'- cGUGGCUGGACGga-GGaCgauaGCCCAGGc -3'
miRNA:   3'- -CACCGAUCUGCauaCCgGa---UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 31357 0.7 0.843894
Target:  5'- aUGcCUGGAagaaucAUGGCCUACCCGAGa -3'
miRNA:   3'- cACcGAUCUgca---UACCGGAUGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 18378 0.69 0.882351
Target:  5'- -gGGCgagaaAGACGgagAUGGCCgaggACCCGGc -3'
miRNA:   3'- caCCGa----UCUGCa--UACCGGa---UGGGUUc -5'
33599 3' -53.5 NC_007605.1 + 73488 0.68 0.926451
Target:  5'- cUGGgUAGACG-GUGGCCUGaguCCgCAGGc -3'
miRNA:   3'- cACCgAUCUGCaUACCGGAU---GG-GUUC- -5'
33599 3' -53.5 NC_007605.1 + 137950 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 141019 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 144088 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 147157 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5'
33599 3' -53.5 NC_007605.1 + 150226 0.68 0.931768
Target:  5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3'
miRNA:   3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.