Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 31357 | 0.7 | 0.843894 |
Target: 5'- aUGcCUGGAagaaucAUGGCCUACCCGAGa -3' miRNA: 3'- cACcGAUCUgca---UACCGGAUGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 144375 | 0.66 | 0.958525 |
Target: 5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3' miRNA: 3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 150513 | 0.66 | 0.958525 |
Target: 5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3' miRNA: 3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 7925 | 0.66 | 0.962153 |
Target: 5'- -gGGCUAGAUcccucuGCCUACCUggGg -3' miRNA: 3'- caCCGAUCUGcauac-CGGAUGGGuuC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 141019 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 144088 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 150226 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 153295 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 54360 | 0.74 | 0.651275 |
Target: 5'- -aGGCUAGGCGUccGGC-UACUCGGGg -3' miRNA: 3'- caCCGAUCUGCAuaCCGgAUGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 141306 | 0.66 | 0.958525 |
Target: 5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3' miRNA: 3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 103021 | 0.67 | 0.938796 |
Target: 5'- aGUGGCUGGGaauggcaggcgagggUGUcucUGGCCUugCCGGa -3' miRNA: 3'- -CACCGAUCU---------------GCAu--ACCGGAugGGUUc -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 159433 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 18378 | 0.69 | 0.882351 |
Target: 5'- -gGGCgagaaAGACGgagAUGGCCgaggACCCGGc -3' miRNA: 3'- caCCGa----UCUGCa--UACCGGa---UGGGUUc -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 10997 | 0.67 | 0.946238 |
Target: 5'- cGUGGCUgcGGugGUGcgcaacgccGGCCUGCuggCCGAGc -3' miRNA: 3'- -CACCGA--UCugCAUa--------CCGGAUG---GGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 73488 | 0.68 | 0.926451 |
Target: 5'- cUGGgUAGACG-GUGGCCUGaguCCgCAGGc -3' miRNA: 3'- cACCgAUCUGCaUACCGGAU---GG-GUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 156364 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 138237 | 0.66 | 0.958525 |
Target: 5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3' miRNA: 3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 147444 | 0.66 | 0.958525 |
Target: 5'- -aGGacggGGACGgagggGGCCUgaaGCCCGGGg -3' miRNA: 3'- caCCga--UCUGCaua--CCGGA---UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 137950 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
|||||||
33599 | 3' | -53.5 | NC_007605.1 | + | 147157 | 0.68 | 0.931768 |
Target: 5'- -gGGCuUGGcCGggucuaagGUGGCCUgGCCCGGGg -3' miRNA: 3'- caCCG-AUCuGCa-------UACCGGA-UGGGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home