miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 3' -46.7 NC_007605.1 + 153909 0.66 0.999963
Target:  5'- ----gGGcGCCcAGgcguccGGGGAGGGGGCCa -3'
miRNA:   3'- auauaUCuUGGaUC------UCCUUCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 122722 0.66 0.999963
Target:  5'- --gAUGGcauCCaAGAGGc-GGGAGCCa -3'
miRNA:   3'- auaUAUCuu-GGaUCUCCuuCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 170303 0.66 0.999963
Target:  5'- --gGUAGAAUgacAGGGGgcGGGGACa -3'
miRNA:   3'- auaUAUCUUGga-UCUCCuuCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 169765 0.66 0.999963
Target:  5'- --gGUAGAAUgacAGGGGgcGGGGACa -3'
miRNA:   3'- auaUAUCUUGga-UCUCCuuCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 57587 0.66 0.999963
Target:  5'- --gGUGGGGgCUGcugcugcagucGGGGAAGGGGAUg -3'
miRNA:   3'- auaUAUCUUgGAU-----------CUCCUUCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 170825 0.66 0.999963
Target:  5'- --gGUAGAAUgacAGGGGgcGGGGACa -3'
miRNA:   3'- auaUAUCUUGga-UCUCCuuCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 171363 0.66 0.999963
Target:  5'- --gGUAGAAUgacAGGGGgcGGGGACa -3'
miRNA:   3'- auaUAUCUUGga-UCUCCuuCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 102308 0.66 0.999959
Target:  5'- gAUAaAGAGCCU-GAGGGAcaggugcgucugucGGGAAUUg -3'
miRNA:   3'- aUAUaUCUUGGAuCUCCUU--------------CCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 82925 0.66 0.99995
Target:  5'- cGUAUGGGGgCUcGGGGcuGGGGAgaugACCa -3'
miRNA:   3'- aUAUAUCUUgGAuCUCCu-UCCCU----UGG- -5'
33600 3' -46.7 NC_007605.1 + 169403 0.66 0.99995
Target:  5'- gGUGauuGAugGCCUGGAacugacGGAAGGaGGGCCg -3'
miRNA:   3'- aUAUau-CU--UGGAUCU------CCUUCC-CUUGG- -5'
33600 3' -46.7 NC_007605.1 + 70046 0.66 0.99995
Target:  5'- --gAUGGAcuGCCUGGucac-GGGAGCCa -3'
miRNA:   3'- auaUAUCU--UGGAUCuccuuCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 56935 0.66 0.999949
Target:  5'- -cUAUGGAuagauagccacccGCUguauGAGGAAGGG-GCCu -3'
miRNA:   3'- auAUAUCU-------------UGGau--CUCCUUCCCuUGG- -5'
33600 3' -46.7 NC_007605.1 + 15011 0.66 0.999945
Target:  5'- --cGUGGAcgGCCUGGGGGAAcuuauggacagucuGGGuAGCg -3'
miRNA:   3'- auaUAUCU--UGGAUCUCCUU--------------CCC-UUGg -5'
33600 3' -46.7 NC_007605.1 + 149170 0.66 0.999933
Target:  5'- --cGUAGAagACCggguUGGAGGAGuGGGAcacgacaacgGCCg -3'
miRNA:   3'- auaUAUCU--UGG----AUCUCCUU-CCCU----------UGG- -5'
33600 3' -46.7 NC_007605.1 + 63991 0.66 0.999933
Target:  5'- ----aGGAAacaggaGGAGGAGGGGGACa -3'
miRNA:   3'- auauaUCUUgga---UCUCCUUCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 37283 0.66 0.999933
Target:  5'- ----gAGAGCUgaUGGAGGccuGGGGGucuGCCg -3'
miRNA:   3'- auauaUCUUGG--AUCUCCu--UCCCU---UGG- -5'
33600 3' -46.7 NC_007605.1 + 32889 0.66 0.999931
Target:  5'- cAUAUuccGGGCCUcagccaucggcccGGGGGGAGGGcacgugugaGACCa -3'
miRNA:   3'- aUAUAu--CUUGGA-------------UCUCCUUCCC---------UUGG- -5'
33600 3' -46.7 NC_007605.1 + 37437 0.66 0.999927
Target:  5'- -------uGCCUGGGGGAgcAGGGAcgauagguguagacGCCg -3'
miRNA:   3'- auauaucuUGGAUCUCCU--UCCCU--------------UGG- -5'
33600 3' -46.7 NC_007605.1 + 104275 0.66 0.999919
Target:  5'- cAUGUAGGugagcgggcagucCUUGGGGGGuggugugccauacaAGGGAGCCu -3'
miRNA:   3'- aUAUAUCUu------------GGAUCUCCU--------------UCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 149186 0.67 0.999884
Target:  5'- --gGUGGAGCgaagguuggAGAGGAgcaGGGGGACa -3'
miRNA:   3'- auaUAUCUUGga-------UCUCCU---UCCCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.