miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 3' -46.7 NC_007605.1 + 40997 1.11 0.018751
Target:  5'- gUAUAUAGAACCUAGAGGAAGGGAACCc -3'
miRNA:   3'- -AUAUAUCUUGGAUCUCCUUCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 143813 1.11 0.018751
Target:  5'- gUAUAUAGAACCUAGAGGAAGGGAACCc -3'
miRNA:   3'- -AUAUAUCUUGGAUCUCCUUCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 45674 0.83 0.580811
Target:  5'- aAUAgGGAGCCaguuggGGAGGAGGGGAACUg -3'
miRNA:   3'- aUAUaUCUUGGa-----UCUCCUUCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 104062 0.81 0.70029
Target:  5'- ------cGACCUGGAGGAGGGGGcuGCCa -3'
miRNA:   3'- auauaucUUGGAUCUCCUUCCCU--UGG- -5'
33600 3' -46.7 NC_007605.1 + 3874 0.81 0.71097
Target:  5'- aGUGUcguuGGAUCU-GAGGGAGGGAACCa -3'
miRNA:   3'- aUAUAu---CUUGGAuCUCCUUCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 43307 0.78 0.830008
Target:  5'- --aAUGGuGCCU-GAGGGAGGGAACa -3'
miRNA:   3'- auaUAUCuUGGAuCUCCUUCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 83265 0.78 0.838841
Target:  5'- gGUAUGGAGCCUGGGGGGgcGGcGGcuCCu -3'
miRNA:   3'- aUAUAUCUUGGAUCUCCU--UC-CCuuGG- -5'
33600 3' -46.7 NC_007605.1 + 83304 0.78 0.838841
Target:  5'- gGUAUGGAGCCUGGGGGGccGGcGGcuCCu -3'
miRNA:   3'- aUAUAUCUUGGAUCUCCU--UC-CCuuGG- -5'
33600 3' -46.7 NC_007605.1 + 40760 0.76 0.90782
Target:  5'- --gGUGGAGCCUAGAGGuAGGuauCCa -3'
miRNA:   3'- auaUAUCUUGGAUCUCCuUCCcuuGG- -5'
33600 3' -46.7 NC_007605.1 + 143576 0.76 0.90782
Target:  5'- --gGUGGAGCCUAGAGGuAGGuauCCa -3'
miRNA:   3'- auaUAUCUUGGAUCUCCuUCCcuuGG- -5'
33600 3' -46.7 NC_007605.1 + 18351 0.76 0.914206
Target:  5'- -uUGUGGAGCCcaaggggGGAGuGAAGGGGGCg -3'
miRNA:   3'- auAUAUCUUGGa------UCUC-CUUCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 5406 0.76 0.914206
Target:  5'- --cGUGGAGaguagggAGGGGGAGGGAGCCc -3'
miRNA:   3'- auaUAUCUUgga----UCUCCUUCCCUUGG- -5'
33600 3' -46.7 NC_007605.1 + 50565 0.75 0.946831
Target:  5'- ----gGGuGCCUGGGGGAuGGGAaaGCCg -3'
miRNA:   3'- auauaUCuUGGAUCUCCUuCCCU--UGG- -5'
33600 3' -46.7 NC_007605.1 + 32778 0.74 0.955562
Target:  5'- --gGUAGGACCUAuAGGAuaGGGGuACCc -3'
miRNA:   3'- auaUAUCUUGGAUcUCCU--UCCCuUGG- -5'
33600 3' -46.7 NC_007605.1 + 137038 0.74 0.959539
Target:  5'- -----cGGGCCUGGAGGGgaggagAGGGGACg -3'
miRNA:   3'- auauauCUUGGAUCUCCU------UCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 140107 0.74 0.959539
Target:  5'- -----cGGGCCUGGAGGGgaggagAGGGGACg -3'
miRNA:   3'- auauauCUUGGAUCUCCU------UCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 146245 0.74 0.959539
Target:  5'- -----cGGGCCUGGAGGGgaggagAGGGGACg -3'
miRNA:   3'- auauauCUUGGAUCUCCU------UCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 149314 0.74 0.959539
Target:  5'- -----cGGGCCUGGAGGGgaggagAGGGGACg -3'
miRNA:   3'- auauauCUUGGAUCUCCU------UCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 152383 0.74 0.959539
Target:  5'- -----cGGGCCUGGAGGGgaggagAGGGGACg -3'
miRNA:   3'- auauauCUUGGAUCUCCU------UCCCUUGg -5'
33600 3' -46.7 NC_007605.1 + 143176 0.74 0.959539
Target:  5'- -----cGGGCCUGGAGGGgaggagAGGGGACg -3'
miRNA:   3'- auauauCUUGGAUCUCCU------UCCCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.