miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 75135 0.66 0.597783
Target:  5'- aGGUgCCCaCCCCCgUCCUugcACCgCCUCCCg -3'
miRNA:   3'- aUUA-GGGaGGGGG-GGGA---UGG-GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115367 0.66 0.597783
Target:  5'- --cUCCCagcguggCCCaaCCUCUGCUCCCCUCu -3'
miRNA:   3'- auuAGGGa------GGGg-GGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 146792 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 137586 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 143723 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 80286 0.66 0.588207
Target:  5'- gGAUCCCUaacgccagCCCCggugCCCCagccacuugACCCggCCCCCg -3'
miRNA:   3'- aUUAGGGA--------GGGG----GGGGa--------UGGG--GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 155999 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 140655 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 152930 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 159068 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 132816 0.66 0.588207
Target:  5'- --uUUCUUCgCaCgUCCUGCCCCCCCg -3'
miRNA:   3'- auuAGGGAGgG-GgGGGAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 149861 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 145576 0.66 0.588207
Target:  5'- -uGUCgCCUgCCUUCCCCcGCUUCCCCUu -3'
miRNA:   3'- auUAG-GGA-GGGGGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115900 0.66 0.578658
Target:  5'- -cAUCUCUCCCgCCUCU-CCCUCUgCg -3'
miRNA:   3'- auUAGGGAGGGgGGGGAuGGGGGGgG- -5'
33600 5' -64.2 NC_007605.1 + 36708 0.66 0.569143
Target:  5'- cAcgCCUUCgCCCCCUCUuugugGCCUUCCUCu -3'
miRNA:   3'- aUuaGGGAG-GGGGGGGA-----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 114231 0.66 0.569143
Target:  5'- --uUCuCCUCUUCCUCCUcagcagcaGCCCCUgCCa -3'
miRNA:   3'- auuAG-GGAGGGGGGGGA--------UGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 115172 0.66 0.569143
Target:  5'- ---aCCCUCgagagUgCCCCCgACCCgaCCCCCa -3'
miRNA:   3'- auuaGGGAG-----GgGGGGGaUGGG--GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 124219 0.66 0.559668
Target:  5'- -------aCCCCCCCCacuggcuCUCCCCCCu -3'
miRNA:   3'- auuagggaGGGGGGGGau-----GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 17720 0.66 0.550237
Target:  5'- ---cCCCUCCCCggaCgCCUgggcGCCCCucaaCCCCg -3'
miRNA:   3'- auuaGGGAGGGGg--G-GGA----UGGGG----GGGG- -5'
33600 5' -64.2 NC_007605.1 + 110181 0.66 0.550237
Target:  5'- ---cCCCUCUacgCCCgCCgccGCCCCCgCCg -3'
miRNA:   3'- auuaGGGAGG---GGGgGGa--UGGGGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.