miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 124219 0.66 0.559668
Target:  5'- -------aCCCCCCCCacuggcuCUCCCCCCu -3'
miRNA:   3'- auuagggaGGGGGGGGau-----GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115900 0.66 0.578658
Target:  5'- -cAUCUCUCCCgCCUCU-CCCUCUgCg -3'
miRNA:   3'- auUAGGGAGGGgGGGGAuGGGGGGgG- -5'
33600 5' -64.2 NC_007605.1 + 117430 0.66 0.550237
Target:  5'- --cUgCCUCCUCCUCCaACUaUCCCCCa -3'
miRNA:   3'- auuAgGGAGGGGGGGGaUGG-GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 80286 0.66 0.588207
Target:  5'- gGAUCCCUaacgccagCCCCggugCCCCagccacuugACCCggCCCCCg -3'
miRNA:   3'- aUUAGGGA--------GGGG----GGGGa--------UGGG--GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 46560 0.66 0.550237
Target:  5'- ---gCCCUcgagaCCUCCCCCcAUCUCCCUCu -3'
miRNA:   3'- auuaGGGA-----GGGGGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 149861 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 39574 0.66 0.550237
Target:  5'- aAAagCCUaCUgCCCCUACCCCgaagCCCCg -3'
miRNA:   3'- aUUagGGAgGGgGGGGAUGGGG----GGGG- -5'
33600 5' -64.2 NC_007605.1 + 152930 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 110181 0.66 0.550237
Target:  5'- ---cCCCUCUacgCCCgCCgccGCCCCCgCCg -3'
miRNA:   3'- auuaGGGAGG---GGGgGGa--UGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 155999 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 133523 0.67 0.485858
Target:  5'- --cUCaCCUacaugucaaCCgCCUCUACCCUCCCCa -3'
miRNA:   3'- auuAG-GGAg--------GGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 136428 0.67 0.513054
Target:  5'- ---aCCCUacgcggCCCCgCUGCCCCCCUUu -3'
miRNA:   3'- auuaGGGAgg----GGGGgGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22772 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 16634 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 36039 0.67 0.52226
Target:  5'- -uAUCCCUUUCCCUCC-ACCCgCaguaaCCCa -3'
miRNA:   3'- auUAGGGAGGGGGGGGaUGGG-Gg----GGG- -5'
33600 5' -64.2 NC_007605.1 + 35047 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 60806 0.67 0.52226
Target:  5'- --cUCCUgcgUCCCCggCCUUGCCUUCCCCc -3'
miRNA:   3'- auuAGGGa--GGGGG--GGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 31978 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 98603 0.67 0.52226
Target:  5'- -cAUCCCUCUCCCCUg-GCCCagaacagcaCCCg -3'
miRNA:   3'- auUAGGGAGGGGGGGgaUGGGgg-------GGG- -5'
33600 5' -64.2 NC_007605.1 + 19703 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.