miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 128390 0.67 0.531528
Target:  5'- ---aCCCUCCCaaaaCCUaCUACCCCauugggCCCa -3'
miRNA:   3'- auuaGGGAGGGg---GGG-GAUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 98475 0.67 0.513054
Target:  5'- aGGUCgUCUCCaCCCCgaccaaCUGCCgCCUCCCa -3'
miRNA:   3'- aUUAG-GGAGG-GGGGg-----GAUGG-GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 156194 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 146987 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 25841 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 31299 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 16634 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 28910 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 136428 0.67 0.513054
Target:  5'- ---aCCCUacgcggCCCCgCUGCCCCCCUUu -3'
miRNA:   3'- auuaGGGAgg----GGGGgGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 36039 0.67 0.52226
Target:  5'- -uAUCCCUUUCCCUCC-ACCCgCaguaaCCCa -3'
miRNA:   3'- auUAGGGAGGGGGGGGaUGGG-Gg----GGG- -5'
33600 5' -64.2 NC_007605.1 + 1797 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 136607 0.67 0.485858
Target:  5'- ----aCCaCCCCCaCCCacACCCCCCuCCg -3'
miRNA:   3'- auuagGGaGGGGG-GGGa-UGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 34368 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 22092 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 13565 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 31978 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 35047 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 22772 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 19703 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 28230 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.