miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 40862 0.67 0.531528
Target:  5'- aGGUUCCUacugggguaCCCCCCUACCCUaCCUu -3'
miRNA:   3'- aUUAGGGAgg-------GGGGGGAUGGGGgGGG- -5'
33600 5' -64.2 NC_007605.1 + 35047 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 161010 0.67 0.521336
Target:  5'- ---cCCUUCCCgCCCaCCUGCCacacuugUCCCCUu -3'
miRNA:   3'- auuaGGGAGGG-GGG-GGAUGG-------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 36039 0.67 0.52226
Target:  5'- -uAUCCCUUUCCCUCC-ACCCgCaguaaCCCa -3'
miRNA:   3'- auUAGGGAGGGGGGGGaUGGG-Gg----GGG- -5'
33600 5' -64.2 NC_007605.1 + 120586 0.67 0.485858
Target:  5'- --cUCCUUCCCCaaccagcaCCacaacaGCCCCCCUCa -3'
miRNA:   3'- auuAGGGAGGGGg-------GGga----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 199 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 137780 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 19023 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 12886 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 156194 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 143918 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 110762 0.67 0.493947
Target:  5'- ---cCCCUCCgaugccugggaguCCCCCCaggcggucggacUGCgCCCCCUCa -3'
miRNA:   3'- auuaGGGAGG-------------GGGGGG------------AUG-GGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 146987 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 130920 0.67 0.513054
Target:  5'- ---aUCCUCCCCCUCCUgguucaACCcuauggaggggaCCCUCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGGA------UGG------------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 120344 0.67 0.485858
Target:  5'- ---gCCCUCCCagCCCacagaGCCCCCUCUu -3'
miRNA:   3'- auuaGGGAGGGg-GGGga---UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 63625 0.67 0.531528
Target:  5'- --uUCCCgCCUCCCCUcGuuCCCCCg -3'
miRNA:   3'- auuAGGGaGGGGGGGGaUggGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 98475 0.67 0.513054
Target:  5'- aGGUCgUCUCCaCCCCgaccaaCUGCCgCCUCCCa -3'
miRNA:   3'- aUUAG-GGAGG-GGGGg-----GAUGG-GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 737 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 131303 0.68 0.476945
Target:  5'- gGGUCCggCCugggagcgcaCCCCCC-ACCCCCgCCg -3'
miRNA:   3'- aUUAGGgaGG----------GGGGGGaUGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 35867 0.68 0.476945
Target:  5'- --uUCCC-CCCaaaauCCUCCUACCCUCUCUu -3'
miRNA:   3'- auuAGGGaGGG-----GGGGGAUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.