Results 81 - 100 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33600 | 5' | -64.2 | NC_007605.1 | + | 266 | 0.68 | 0.476945 |
Target: 5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3' miRNA: 3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 804 | 0.68 | 0.476945 |
Target: 5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3' miRNA: 3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 15195 | 0.68 | 0.434506 |
Target: 5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3' miRNA: 3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 18264 | 0.68 | 0.434506 |
Target: 5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3' miRNA: 3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 85719 | 0.68 | 0.476945 |
Target: 5'- ---cCCCUCCUCCCCgcagucugUUGCCCCaggguucaUCCCa -3' miRNA: 3'- auuaGGGAGGGGGGG--------GAUGGGG--------GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 118918 | 0.68 | 0.459366 |
Target: 5'- -cAUCgCCUCuaggaaucaCCCCCCUUAUCCagCCCCg -3' miRNA: 3'- auUAG-GGAG---------GGGGGGGAUGGGg-GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 110680 | 0.68 | 0.459366 |
Target: 5'- ---gCCCUCCCuuCCCCCgagcugACCCgggCCCgCCg -3' miRNA: 3'- auuaGGGAGGG--GGGGGa-----UGGG---GGG-GG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 119573 | 0.68 | 0.450707 |
Target: 5'- aGGUCCgCggaaauuggugCCCCUCUCUGCCCUCCUg -3' miRNA: 3'- aUUAGG-Ga----------GGGGGGGGAUGGGGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 125953 | 0.68 | 0.450707 |
Target: 5'- ---cCCCUCCUCCCCaaCUGgCUCCCUa -3' miRNA: 3'- auuaGGGAGGGGGGG--GAUgGGGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 88696 | 0.68 | 0.442138 |
Target: 5'- aUGGUCaUCUCCCCagCCCCgaGCCCCcauacgCCCCa -3' miRNA: 3'- -AUUAG-GGAGGGG--GGGGa-UGGGG------GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 33609 | 0.68 | 0.434506 |
Target: 5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3' miRNA: 3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 36669 | 0.68 | 0.441286 |
Target: 5'- uUGGUCCagccacaugUCCCCCCUCUACgCCCgacagcaCCCa -3' miRNA: 3'- -AUUAGGg--------AGGGGGGGGAUGgGGG-------GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 24402 | 0.68 | 0.434506 |
Target: 5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3' miRNA: 3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 21333 | 0.68 | 0.434506 |
Target: 5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3' miRNA: 3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 446 | 0.68 | 0.441286 |
Target: 5'- ---gCCCgcagCCCCCggagcccgcggacCCCgACCCCCCgCCg -3' miRNA: 3'- auuaGGGa---GGGGG-------------GGGaUGGGGGG-GG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 1506 | 0.68 | 0.441286 |
Target: 5'- ---gCCCgcagCCCCCggagcccgcggacCCCgACCCCCCgCCg -3' miRNA: 3'- auuaGGGa---GGGGG-------------GGGaUGGGGGG-GG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 2043 | 0.68 | 0.441286 |
Target: 5'- ---gCCCgcagCCCCCggagcccgcggacCCCgACCCCCCgCCg -3' miRNA: 3'- auuaGGGa---GGGGG-------------GGGaUGGGGGG-GG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 115606 | 0.68 | 0.442138 |
Target: 5'- aGAUCa-UCgCCUCCCUGCCUCUCCUa -3' miRNA: 3'- aUUAGggAGgGGGGGGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 63590 | 0.68 | 0.458496 |
Target: 5'- ---aCCCaCCCCCaCCCUucGCCCCUaucuuaaCCCa -3' miRNA: 3'- auuaGGGaGGGGG-GGGA--UGGGGG-------GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 20469 | 0.68 | 0.459366 |
Target: 5'- -uAUCCUagauauaCCCCUCCUauGCgCCCCCCg -3' miRNA: 3'- auUAGGGag-----GGGGGGGA--UGgGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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