miRNA display CGI


Results 101 - 120 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 30540 0.68 0.434506
Target:  5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3'
miRNA:   3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 266 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 118386 0.68 0.476945
Target:  5'- -cAUCCCUUgaCCaacaaCCUGCCCCUCCUc -3'
miRNA:   3'- auUAGGGAGggGGg----GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 804 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 56781 0.68 0.468113
Target:  5'- aAAUCCCaguuguuauUCCCaCCUCCUACUCCCgUa -3'
miRNA:   3'- aUUAGGG---------AGGG-GGGGGAUGGGGGgGg -5'
33600 5' -64.2 NC_007605.1 + 118918 0.68 0.459366
Target:  5'- -cAUCgCCUCuaggaaucaCCCCCCUUAUCCagCCCCg -3'
miRNA:   3'- auUAG-GGAG---------GGGGGGGAUGGGg-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 110680 0.68 0.459366
Target:  5'- ---gCCCUCCCuuCCCCCgagcugACCCgggCCCgCCg -3'
miRNA:   3'- auuaGGGAGGG--GGGGGa-----UGGG---GGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 20469 0.68 0.459366
Target:  5'- -uAUCCUagauauaCCCCUCCUauGCgCCCCCCg -3'
miRNA:   3'- auUAGGGag-----GGGGGGGA--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 63590 0.68 0.458496
Target:  5'- ---aCCCaCCCCCaCCCUucGCCCCUaucuuaaCCCa -3'
miRNA:   3'- auuaGGGaGGGGG-GGGA--UGGGGG-------GGG- -5'
33600 5' -64.2 NC_007605.1 + 115606 0.68 0.442138
Target:  5'- aGAUCa-UCgCCUCCCUGCCUCUCCUa -3'
miRNA:   3'- aUUAGggAGgGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 85719 0.68 0.476945
Target:  5'- ---cCCCUCCUCCCCgcagucugUUGCCCCaggguucaUCCCa -3'
miRNA:   3'- auuaGGGAGGGGGGG--------GAUGGGG--------GGGG- -5'
33600 5' -64.2 NC_007605.1 + 1326 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 1864 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 133337 0.69 0.425282
Target:  5'- ---cCCCgCCCUCCCC-AUCCCCagCCCa -3'
miRNA:   3'- auuaGGGaGGGGGGGGaUGGGGG--GGG- -5'
33600 5' -64.2 NC_007605.1 + 54491 0.69 0.425282
Target:  5'- --cUCCgCUCCUCgCCCU-CCUCCUCCu -3'
miRNA:   3'- auuAGG-GAGGGGgGGGAuGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 94986 0.69 0.425282
Target:  5'- ---gCCCggggggaCCUCCCCUGCUguUCCCCCa -3'
miRNA:   3'- auuaGGGag-----GGGGGGGAUGG--GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 148746 0.69 0.416998
Target:  5'- ----gCCUCCCUggugagCCCUUGCCgCUCCCCg -3'
miRNA:   3'- auuagGGAGGGG------GGGGAUGG-GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1638 0.69 0.384874
Target:  5'- ---cCCCaugCCCCaCCCCccgAUgCCCCCCg -3'
miRNA:   3'- auuaGGGa--GGGG-GGGGa--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 578 0.69 0.384874
Target:  5'- ---cCCCaugCCCCaCCCCccgAUgCCCCCCg -3'
miRNA:   3'- auuaGGGa--GGGG-GGGGa--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 32166 0.69 0.384874
Target:  5'- --cUCCCguaCCCaCCCC--CCCUCCCCa -3'
miRNA:   3'- auuAGGGag-GGG-GGGGauGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.