Results 41 - 60 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33600 | 5' | -64.2 | NC_007605.1 | + | 170054 | 0.75 | 0.172523 |
Target: 5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3' miRNA: 3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 169517 | 0.75 | 0.172523 |
Target: 5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3' miRNA: 3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 32246 | 0.75 | 0.160603 |
Target: 5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3' miRNA: 3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 29177 | 0.75 | 0.160603 |
Target: 5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3' miRNA: 3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 26108 | 0.75 | 0.160603 |
Target: 5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3' miRNA: 3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 23039 | 0.75 | 0.160603 |
Target: 5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3' miRNA: 3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 19970 | 0.75 | 0.160603 |
Target: 5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3' miRNA: 3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 12115 | 0.75 | 0.178351 |
Target: 5'- -uGUUCCUCCCCcgguccccaguagggCCgCCUGCCCCCCUg -3' miRNA: 3'- auUAGGGAGGGG---------------GG-GGAUGGGGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 11176 | 0.75 | 0.172523 |
Target: 5'- gGGUCCCgCCUCUCCgUACCCCCUCa -3' miRNA: 3'- aUUAGGGaGGGGGGGgAUGGGGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 13833 | 0.75 | 0.160603 |
Target: 5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3' miRNA: 3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 15160 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 75287 | 0.74 | 0.194147 |
Target: 5'- gGAUCCaaaccCCCUCCCCUGuCUCCCCUCg -3' miRNA: 3'- aUUAGGga---GGGGGGGGAU-GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 12067 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCugCCaCCCCaGCCUCCCCCc -3' miRNA: 3'- auuaGGGAGG--GG-GGGGaUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 33574 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 24367 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 30505 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 27436 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 21298 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 18229 | 0.74 | 0.18964 |
Target: 5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3' miRNA: 3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 76155 | 0.74 | 0.185226 |
Target: 5'- --cUCCUgCCCCCUCCaacaGCCCCCCCa -3' miRNA: 3'- auuAGGGaGGGGGGGGa---UGGGGGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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