Results 81 - 100 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33600 | 5' | -64.2 | NC_007605.1 | + | 25385 | 0.72 | 0.250147 |
Target: 5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3' miRNA: 3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 23621 | 0.72 | 0.250147 |
Target: 5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3' miRNA: 3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 22316 | 0.72 | 0.250147 |
Target: 5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3' miRNA: 3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 20552 | 0.72 | 0.250147 |
Target: 5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3' miRNA: 3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 19247 | 0.72 | 0.250147 |
Target: 5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3' miRNA: 3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 17483 | 0.72 | 0.250147 |
Target: 5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3' miRNA: 3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 16178 | 0.72 | 0.250147 |
Target: 5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3' miRNA: 3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 31523 | 0.72 | 0.250147 |
Target: 5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3' miRNA: 3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 32828 | 0.72 | 0.250147 |
Target: 5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3' miRNA: 3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 34592 | 0.72 | 0.250147 |
Target: 5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3' miRNA: 3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 17542 | 0.72 | 0.2736 |
Target: 5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3' miRNA: 3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 14473 | 0.72 | 0.2736 |
Target: 5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3' miRNA: 3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 108291 | 0.72 | 0.272993 |
Target: 5'- aGGUCCUgggCCUCCCaCCaccguuaUGCCUCCCCCu -3' miRNA: 3'- aUUAGGGa--GGGGGG-GG-------AUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 34836 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 31767 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 28698 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 25629 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 22560 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 19491 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 16422 | 0.72 | 0.255851 |
Target: 5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3' miRNA: 3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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