miRNA display CGI


Results 1 - 20 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 41031 1.09 0.000663
Target:  5'- gUAAUCCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- -AUUAGGGAGGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 143847 1.09 0.000663
Target:  5'- gUAAUCCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- -AUUAGGGAGGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 39980 0.83 0.049871
Target:  5'- gGGUCCCgggacgCCCCCuCCCUGCUCCCaCCCg -3'
miRNA:   3'- aUUAGGGa-----GGGGG-GGGAUGGGGG-GGG- -5'
33600 5' -64.2 NC_007605.1 + 131450 0.82 0.05248
Target:  5'- gGGUCCCaggaccacgCCCCUCCCUcacuGCCCCCCCCc -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75781 0.82 0.05248
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCCg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 134414 0.81 0.067641
Target:  5'- ---cCCCUgCCCCugCCCCUGCCCCUCCCc -3'
miRNA:   3'- auuaGGGA-GGGG--GGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75718 0.79 0.084828
Target:  5'- ---cCCCUCcugCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 166222 0.79 0.084828
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 75451 0.79 0.084828
Target:  5'- ---cCCCUCcugCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20 0.79 0.086977
Target:  5'- aAAUCCgaCCCCCCCaUGCCCCCgCCa -3'
miRNA:   3'- aUUAGGgaGGGGGGGgAUGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 75166 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75340 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75370 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75214 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75190 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75316 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75292 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75394 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75496 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75577 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.