miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 75496 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75124 0.78 0.106126
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75250 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75613 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75532 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 62119 0.78 0.1115
Target:  5'- ---aCCCUCUCCCCCgCcgGCCCCgCCCCc -3'
miRNA:   3'- auuaGGGAGGGGGGG-Ga-UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 75418 0.78 0.114281
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 110390 0.78 0.114281
Target:  5'- --cUCCggCCCUCCCCUguaaGCCCCCCCUa -3'
miRNA:   3'- auuAGGgaGGGGGGGGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1368 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 846 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1906 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 308 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75682 0.77 0.132374
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75745 0.77 0.132374
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 153262 0.76 0.153074
Target:  5'- -cGUCUUUCUCgCCCCCUucACUCCCCCCu -3'
miRNA:   3'- auUAGGGAGGG-GGGGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22935 0.76 0.156798
Target:  5'- aGGUgCCUCCagagCCCCUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGGg---GGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13833 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 26108 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 32246 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 29177 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.