miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 23039 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13833 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19970 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 11176 0.75 0.172523
Target:  5'- gGGUCCCgCCUCUCCgUACCCCCUCa -3'
miRNA:   3'- aUUAGGGaGGGGGGGgAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 169517 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 170054 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 170577 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 171114 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 36363 0.75 0.176668
Target:  5'- --cUCCCaccaCCCCCCCC-ACCaccaCCCCCa -3'
miRNA:   3'- auuAGGGa---GGGGGGGGaUGGg---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 12115 0.75 0.178351
Target:  5'- -uGUUCCUCCCCcgguccccaguagggCCgCCUGCCCCCCUg -3'
miRNA:   3'- auUAGGGAGGGG---------------GG-GGAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 76155 0.74 0.185226
Target:  5'- --cUCCUgCCCCCUCCaacaGCCCCCCCa -3'
miRNA:   3'- auuAGGGaGGGGGGGGa---UGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 1984 0.74 0.185226
Target:  5'- cUGcgCCCgcgcgCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 21298 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 18229 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 27436 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 15160 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 33574 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 12067 0.74 0.18964
Target:  5'- ---cCCCUCCugCCaCCCCaGCCUCCCCCc -3'
miRNA:   3'- auuaGGGAGG--GG-GGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 24367 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 30505 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.