miRNA display CGI


Results 61 - 80 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 75287 0.74 0.194147
Target:  5'- gGAUCCaaaccCCCUCCCCUGuCUCCCCUCg -3'
miRNA:   3'- aUUAGGga---GGGGGGGGAU-GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 113874 0.74 0.200614
Target:  5'- -cAUCCCUCaccaaucaccacccgCCUCCCCgacACCCCaCCCCg -3'
miRNA:   3'- auUAGGGAG---------------GGGGGGGa--UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 386 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 924 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 1446 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 105239 0.73 0.2166
Target:  5'- cUGGUCCCUCCCCUgggCCCUugCUCaugaugucaaccggCCCCg -3'
miRNA:   3'- -AUUAGGGAGGGGG---GGGAugGGG--------------GGGG- -5'
33600 5' -64.2 NC_007605.1 + 32560 0.73 0.217604
Target:  5'- aGGUCCCaCCaaauguuacagagCCCCCC--CCCCCCCCg -3'
miRNA:   3'- aUUAGGGaGG-------------GGGGGGauGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 16797 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 29072 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13728 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 35210 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 32141 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19866 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 26003 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 59477 0.73 0.233666
Target:  5'- aGAUCugCCUCCCCUCCCU-CUCCCUCg -3'
miRNA:   3'- aUUAG--GGAGGGGGGGGAuGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 121725 0.73 0.243442
Target:  5'- gUGGUCCCcuccggaUCCCCCUCCUcucuaucACCgCCgCCCCg -3'
miRNA:   3'- -AUUAGGG-------AGGGGGGGGA-------UGG-GG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 13109 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 29759 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 28454 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 34592 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.