miRNA display CGI


Results 81 - 100 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 25385 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 23621 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22316 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20552 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 14414 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 16178 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 17483 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 32828 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 31523 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 34592 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115399 0.72 0.250147
Target:  5'- ---cCCCUCCCgCCgCCUcaguGCCCCCCUUu -3'
miRNA:   3'- auuaGGGAGGGgGG-GGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13109 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 34836 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 31767 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 28698 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 25629 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22560 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 16422 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13353 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19491 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.