miRNA display CGI


Results 101 - 120 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 117758 0.72 0.26166
Target:  5'- --uUCCCUCCCgcccaaagCCCCUguccagGCUCCCCUCg -3'
miRNA:   3'- auuAGGGAGGG--------GGGGGa-----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 107642 0.72 0.26166
Target:  5'- ---cCCCUCCUCCUCCUGuuUCCUCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGAU--GGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 108291 0.72 0.272993
Target:  5'- aGGUCCUgggCCUCCCaCCaccguuaUGCCUCCCCCu -3'
miRNA:   3'- aUUAGGGa--GGGGGG-GG-------AUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20611 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 48742 0.72 0.2736
Target:  5'- cUGcgCUCUCCUggaCCCuaaCCUGCUCCCCCCg -3'
miRNA:   3'- -AUuaGGGAGGG---GGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 123198 0.72 0.2736
Target:  5'- --cUCCCcuacgCCCCCgCCCgucuuucuCCCCCCCUc -3'
miRNA:   3'- auuAGGGa----GGGGG-GGGau------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 17542 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 32887 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 14473 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 23680 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 29818 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 26749 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 108535 0.71 0.285974
Target:  5'- ---cCCCUCCacugccaCCCCCggcgaccgccACCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGg------GGGGGa---------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 95968 0.71 0.294895
Target:  5'- ---gCCCUCUUCCCCCaucagaccgucucagUgacacucaccguGCCCCCCCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGG---------------A------------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 105467 0.71 0.298784
Target:  5'- ---gUCCUCCCCCCCU--CCCUCgCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGauGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 71533 0.71 0.305354
Target:  5'- aAAUUCUgCCCCCCUCUGCUCCCUg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 160459 0.71 0.312034
Target:  5'- uUAAUCCCgCCCguaggaCCCCUUugCCCagCCCCg -3'
miRNA:   3'- -AUUAGGGaGGG------GGGGGAugGGG--GGGG- -5'
33600 5' -64.2 NC_007605.1 + 106914 0.71 0.318825
Target:  5'- -cAUCCUggccagCCCCCgucacCCCUACaCCCaCCCCg -3'
miRNA:   3'- auUAGGGa-----GGGGG-----GGGAUG-GGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 100715 0.7 0.332737
Target:  5'- aUGGUCaCC-CCgCCCCC-AUCUCCCCCg -3'
miRNA:   3'- -AUUAG-GGaGGgGGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 56447 0.7 0.332737
Target:  5'- --cUCCUUCCCCCgCCUccugAUCUCCgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGA----UGGGGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.