Results 41 - 60 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33600 | 5' | -64.2 | NC_007605.1 | + | 28910 | 0.67 | 0.52226 |
Target: 5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3' miRNA: 3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 16634 | 0.67 | 0.52226 |
Target: 5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3' miRNA: 3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 98603 | 0.67 | 0.52226 |
Target: 5'- -cAUCCCUCUCCCCUg-GCCCagaacagcaCCCg -3' miRNA: 3'- auUAGGGAGGGGGGGgaUGGGgg-------GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 36039 | 0.67 | 0.52226 |
Target: 5'- -uAUCCCUUUCCCUCC-ACCCgCaguaaCCCa -3' miRNA: 3'- auUAGGGAGGGGGGGGaUGGG-Gg----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 13565 | 0.67 | 0.52226 |
Target: 5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3' miRNA: 3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 35047 | 0.67 | 0.52226 |
Target: 5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3' miRNA: 3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 22772 | 0.67 | 0.52226 |
Target: 5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3' miRNA: 3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 60806 | 0.67 | 0.52226 |
Target: 5'- --cUCCUgcgUCCCCggCCUUGCCUUCCCCc -3' miRNA: 3'- auuAGGGa--GGGGG--GGGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 161010 | 0.67 | 0.521336 |
Target: 5'- ---cCCUUCCCgCCCaCCUGCCacacuugUCCCCUu -3' miRNA: 3'- auuaGGGAGGG-GGG-GGAUGG-------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 153125 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 143918 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 159263 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 98475 | 0.67 | 0.513054 |
Target: 5'- aGGUCgUCUCCaCCCCgaccaaCUGCCgCCUCCCa -3' miRNA: 3'- aUUAG-GGAGG-GGGGg-----GAUGG-GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 137780 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 136428 | 0.67 | 0.513054 |
Target: 5'- ---aCCCUacgcggCCCCgCUGCCCCCCUUu -3' miRNA: 3'- auuaGGGAgg----GGGGgGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 156194 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 130920 | 0.67 | 0.513054 |
Target: 5'- ---aUCCUCCCCCUCCUgguucaACCcuauggaggggaCCCUCCu -3' miRNA: 3'- auuaGGGAGGGGGGGGA------UGG------------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 140849 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 28104 | 0.67 | 0.513054 |
Target: 5'- ---aUCCUCCCCCUCCUgguucaACCcuauggaggggaCCCUCCu -3' miRNA: 3'- auuaGGGAGGGGGGGGA------UGG------------GGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 150056 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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