Results 61 - 80 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33600 | 5' | -64.2 | NC_007605.1 | + | 146987 | 0.67 | 0.513054 |
Target: 5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3' miRNA: 3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 199 | 0.67 | 0.49485 |
Target: 5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3' miRNA: 3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 1797 | 0.67 | 0.49485 |
Target: 5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3' miRNA: 3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 159987 | 0.67 | 0.49485 |
Target: 5'- ---cCCCUCUgCCUCCgGCCgCCCCg -3' miRNA: 3'- auuaGGGAGGgGGGGGaUGGgGGGGg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 737 | 0.67 | 0.49485 |
Target: 5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3' miRNA: 3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 1259 | 0.67 | 0.49485 |
Target: 5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3' miRNA: 3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 110762 | 0.67 | 0.493947 |
Target: 5'- ---cCCCUCCgaugccugggaguCCCCCCaggcggucggacUGCgCCCCCUCa -3' miRNA: 3'- auuaGGGAGG-------------GGGGGG------------AUG-GGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 120344 | 0.67 | 0.485858 |
Target: 5'- ---gCCCUCCCagCCCacagaGCCCCCUCUu -3' miRNA: 3'- auuaGGGAGGGg-GGGga---UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 120586 | 0.67 | 0.485858 |
Target: 5'- --cUCCUUCCCCaaccagcaCCacaacaGCCCCCCUCa -3' miRNA: 3'- auuAGGGAGGGGg-------GGga----UGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 133523 | 0.67 | 0.485858 |
Target: 5'- --cUCaCCUacaugucaaCCgCCUCUACCCUCCCCa -3' miRNA: 3'- auuAG-GGAg--------GGgGGGGAUGGGGGGGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 12886 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 19023 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 22092 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 25161 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 28230 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 31299 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 136607 | 0.67 | 0.485858 |
Target: 5'- ----aCCaCCCCCaCCCacACCCCCCuCCg -3' miRNA: 3'- auuagGGaGGGGG-GGGa-UGGGGGG-GG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 34368 | 0.67 | 0.485858 |
Target: 5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3' miRNA: 3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 1326 | 0.68 | 0.476945 |
Target: 5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3' miRNA: 3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5' |
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33600 | 5' | -64.2 | NC_007605.1 | + | 804 | 0.68 | 0.476945 |
Target: 5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3' miRNA: 3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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