miRNA display CGI


Results 81 - 100 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 266 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 804 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 1326 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 1864 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 131303 0.68 0.476945
Target:  5'- gGGUCCggCCugggagcgcaCCCCCC-ACCCCCgCCg -3'
miRNA:   3'- aUUAGGgaGG----------GGGGGGaUGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 15950 0.68 0.476945
Target:  5'- cUGGUCUCcgCUCCCCUCUAgCCCCguuaaaCCCa -3'
miRNA:   3'- -AUUAGGGa-GGGGGGGGAUgGGGG------GGG- -5'
33600 5' -64.2 NC_007605.1 + 35867 0.68 0.476945
Target:  5'- --uUCCC-CCCaaaauCCUCCUACCCUCUCUu -3'
miRNA:   3'- auuAGGGaGGG-----GGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 37627 0.68 0.473402
Target:  5'- ---cCCCUCCauccaguaaaaaCCCUUGCCCUCUCCa -3'
miRNA:   3'- auuaGGGAGGgg----------GGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 56781 0.68 0.468113
Target:  5'- aAAUCCCaguuguuauUCCCaCCUCCUACUCCCgUa -3'
miRNA:   3'- aUUAGGG---------AGGG-GGGGGAUGGGGGgGg -5'
33600 5' -64.2 NC_007605.1 + 115212 0.68 0.468113
Target:  5'- cAGUCCCUgCUcggCCUCCgccGCCUUCCCCa -3'
miRNA:   3'- aUUAGGGAgGG---GGGGGa--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 95104 0.68 0.468113
Target:  5'- ----aCCUCCCCCgCCgucuCCCCaguaugCCCCa -3'
miRNA:   3'- auuagGGAGGGGGgGGau--GGGG------GGGG- -5'
33600 5' -64.2 NC_007605.1 + 20469 0.68 0.459366
Target:  5'- -uAUCCUagauauaCCCCUCCUauGCgCCCCCCg -3'
miRNA:   3'- auUAGGGag-----GGGGGGGA--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 36452 0.68 0.459366
Target:  5'- ---aCCC-CCgCCCCC-ACCaCCCCCa -3'
miRNA:   3'- auuaGGGaGGgGGGGGaUGGgGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 90242 0.68 0.459366
Target:  5'- -cGUCCgCUgCCgCCCCUccuugaGCCCCUCCUu -3'
miRNA:   3'- auUAGG-GAgGGgGGGGA------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 110680 0.68 0.459366
Target:  5'- ---gCCCUCCCuuCCCCCgagcugACCCgggCCCgCCg -3'
miRNA:   3'- auuaGGGAGGG--GGGGGa-----UGGG---GGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 118918 0.68 0.459366
Target:  5'- -cAUCgCCUCuaggaaucaCCCCCCUUAUCCagCCCCg -3'
miRNA:   3'- auUAG-GGAG---------GGGGGGGAUGGGg-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 63590 0.68 0.458496
Target:  5'- ---aCCCaCCCCCaCCCUucGCCCCUaucuuaaCCCa -3'
miRNA:   3'- auuaGGGaGGGGG-GGGA--UGGGGG-------GGG- -5'
33600 5' -64.2 NC_007605.1 + 119573 0.68 0.450707
Target:  5'- aGGUCCgCggaaauuggugCCCCUCUCUGCCCUCCUg -3'
miRNA:   3'- aUUAGG-Ga----------GGGGGGGGAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 125953 0.68 0.450707
Target:  5'- ---cCCCUCCUCCCCaaCUGgCUCCCUa -3'
miRNA:   3'- auuaGGGAGGGGGGG--GAUgGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 88696 0.68 0.442138
Target:  5'- aUGGUCaUCUCCCCagCCCCgaGCCCCcauacgCCCCa -3'
miRNA:   3'- -AUUAG-GGAGGGG--GGGGa-UGGGG------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.