miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 20 0.79 0.086977
Target:  5'- aAAUCCgaCCCCCCCaUGCCCCCgCCa -3'
miRNA:   3'- aUUAGGgaGGGGGGGgAUGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 49 0.68 0.433662
Target:  5'- -------aCCCCCCCCgAUgCCCCCCg -3'
miRNA:   3'- auuagggaGGGGGGGGaUGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 199 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 266 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 308 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 386 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 446 0.68 0.441286
Target:  5'- ---gCCCgcagCCCCCggagcccgcggacCCCgACCCCCCgCCg -3'
miRNA:   3'- auuaGGGa---GGGGG-------------GGGaUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 578 0.69 0.384874
Target:  5'- ---cCCCaugCCCCaCCCCccgAUgCCCCCCg -3'
miRNA:   3'- auuaGGGa--GGGG-GGGGa--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 737 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 804 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 846 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 924 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 993 0.69 0.416998
Target:  5'- ---cCCCgggCCCgcggaCCCCgACCCCCCgCCg -3'
miRNA:   3'- auuaGGGa--GGGg----GGGGaUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 1259 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1326 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 1368 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1446 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 1506 0.68 0.441286
Target:  5'- ---gCCCgcagCCCCCggagcccgcggacCCCgACCCCCCgCCg -3'
miRNA:   3'- auuaGGGa---GGGGG-------------GGGaUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 1638 0.69 0.384874
Target:  5'- ---cCCCaugCCCCaCCCCccgAUgCCCCCCg -3'
miRNA:   3'- auuaGGGa--GGGG-GGGGa--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1797 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.