miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 1864 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 1906 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1984 0.74 0.185226
Target:  5'- cUGcgCCCgcgcgCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 2043 0.68 0.441286
Target:  5'- ---gCCCgcagCCCCCggagcccgcggacCCCgACCCCCCgCCg -3'
miRNA:   3'- auuaGGGa---GGGGG-------------GGGaUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 2837 0.69 0.377102
Target:  5'- ---gCCCgcgacggCCCCCUCgaggACCCCCCCUc -3'
miRNA:   3'- auuaGGGag-----GGGGGGGa---UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 5733 0.66 0.540856
Target:  5'- -uGUCCCccuagCCCCgggCCCaGCCCUCCUCa -3'
miRNA:   3'- auUAGGGa----GGGGg--GGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 11176 0.75 0.172523
Target:  5'- gGGUCCCgCCUCUCCgUACCCCCUCa -3'
miRNA:   3'- aUUAGGGaGGGGGGGgAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 12067 0.74 0.18964
Target:  5'- ---cCCCUCCugCCaCCCCaGCCUCCCCCc -3'
miRNA:   3'- auuaGGGAGG--GG-GGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 12115 0.75 0.178351
Target:  5'- -uGUUCCUCCCCcgguccccaguagggCCgCCUGCCCCCCUg -3'
miRNA:   3'- auUAGGGAGGGG---------------GG-GGAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 12886 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 13109 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13220 0.7 0.339858
Target:  5'- --uUCUCUCUgUCCCCCUGCUCCUCuCCa -3'
miRNA:   3'- auuAGGGAGG-GGGGGGAUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 13353 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13565 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 13626 0.69 0.384874
Target:  5'- -cAUCCC-CgCCCCCCUguguccACCCCaguCCCg -3'
miRNA:   3'- auUAGGGaGgGGGGGGA------UGGGGg--GGG- -5'
33600 5' -64.2 NC_007605.1 + 13728 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13833 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 14153 0.66 0.538986
Target:  5'- --cUUCCUCaCCCCCCagcaguccaucGCCCCcagCCCCa -3'
miRNA:   3'- auuAGGGAG-GGGGGGga---------UGGGG---GGGG- -5'
33600 5' -64.2 NC_007605.1 + 14414 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 14473 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.