miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 19247 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19358 0.7 0.339858
Target:  5'- --uUCUCUCUgUCCCCCUGCUCCUCuCCa -3'
miRNA:   3'- auuAGGGAGG-GGGGGGAUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 19491 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19703 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 19764 0.69 0.384874
Target:  5'- -cAUCCC-CgCCCCCCUguguccACCCCaguCCCg -3'
miRNA:   3'- auUAGGGaGgGGGGGGA------UGGGGg--GGG- -5'
33600 5' -64.2 NC_007605.1 + 19866 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19970 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20469 0.68 0.459366
Target:  5'- -uAUCCUagauauaCCCCUCCUauGCgCCCCCCg -3'
miRNA:   3'- auUAGGGag-----GGGGGGGA--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20552 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20611 0.72 0.2736
Target:  5'- --uUCCCUCCCUCgUCUugCCCUgcgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGgGGAugGGGG---GGG- -5'
33600 5' -64.2 NC_007605.1 + 21088 0.7 0.361879
Target:  5'- ---gCCCUCCUcaguucccuagUCCCCgggcuucagGCCCCCUCCg -3'
miRNA:   3'- auuaGGGAGGG-----------GGGGGa--------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 21263 0.69 0.39275
Target:  5'- ---aCCCUgcugcUCCCCUCCUGCCaCCCCa -3'
miRNA:   3'- auuaGGGA-----GGGGGGGGAUGGgGGGGg -5'
33600 5' -64.2 NC_007605.1 + 21298 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 21333 0.68 0.434506
Target:  5'- cGGUCCCcaguagggccgccugCCCCCCugcacccaguaCCUGCCCCUCUUg -3'
miRNA:   3'- aUUAGGGa--------------GGGGGG-----------GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22092 0.67 0.485858
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguuaaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
33600 5' -64.2 NC_007605.1 + 22316 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22427 0.7 0.339858
Target:  5'- --uUCUCUCUgUCCCCCUGCUCCUCuCCa -3'
miRNA:   3'- auuAGGGAGG-GGGGGGAUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 22560 0.72 0.255851
Target:  5'- --cUCCUUCCCgCCUCCcACCCgagCCCCCu -3'
miRNA:   3'- auuAGGGAGGG-GGGGGaUGGG---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22772 0.67 0.52226
Target:  5'- --cUCCCgggCCCagCCUCguccACCCCuCCCCa -3'
miRNA:   3'- auuAGGGa--GGGg-GGGGa---UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 22833 0.69 0.384874
Target:  5'- -cAUCCC-CgCCCCCCUguguccACCCCaguCCCg -3'
miRNA:   3'- auUAGGGaGgGGGGGGA------UGGGGg--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.