miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 171114 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 170577 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 170054 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 169517 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 166222 0.79 0.084828
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 163017 0.69 0.377102
Target:  5'- gGGUCCCaggUCCCCUCCUGCagggUCCCCa -3'
miRNA:   3'- aUUAGGGa--GGGGGGGGAUGgg--GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 161010 0.67 0.521336
Target:  5'- ---cCCUUCCCgCCCaCCUGCCacacuugUCCCCUu -3'
miRNA:   3'- auuaGGGAGGG-GGG-GGAUGG-------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 160914 0.66 0.550237
Target:  5'- ---cCCCgggCCCaCCCCacACUCCCUCCa -3'
miRNA:   3'- auuaGGGa--GGG-GGGGgaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 160808 0.69 0.408814
Target:  5'- -cGUCUg-CCCCCggagCCCUGCCCUCCuCCa -3'
miRNA:   3'- auUAGGgaGGGGG----GGGAUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 160459 0.71 0.312034
Target:  5'- uUAAUCCCgCCCguaggaCCCCUUugCCCagCCCCg -3'
miRNA:   3'- -AUUAGGGaGGG------GGGGGAugGGG--GGGG- -5'
33600 5' -64.2 NC_007605.1 + 159987 0.67 0.49485
Target:  5'- ---cCCCUCUgCCUCCgGCCgCCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGaUGGgGGGGg -5'
33600 5' -64.2 NC_007605.1 + 159263 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 159068 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 158741 0.66 0.540856
Target:  5'- aGAUCCUUaaauaCCCaCCCCCUGCCCUUa-- -3'
miRNA:   3'- aUUAGGGA-----GGG-GGGGGAUGGGGGggg -5'
33600 5' -64.2 NC_007605.1 + 156194 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 155999 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 153262 0.76 0.153074
Target:  5'- -cGUCUUUCUCgCCCCCUucACUCCCCCCu -3'
miRNA:   3'- auUAGGGAGGG-GGGGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 153125 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 152930 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 150056 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.