miRNA display CGI


Results 21 - 40 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 149861 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 148746 0.69 0.416998
Target:  5'- ----gCCUCCCUggugagCCCUUGCCgCUCCCCg -3'
miRNA:   3'- auuagGGAGGGG------GGGGAUGG-GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 146987 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 146792 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 146464 0.7 0.361879
Target:  5'- ---gCCCUUUUCCCCCUugUUCaCCCCa -3'
miRNA:   3'- auuaGGGAGGGGGGGGAugGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 145576 0.66 0.588207
Target:  5'- -uGUCgCCUgCCUUCCCCcGCUUCCCCUu -3'
miRNA:   3'- auUAG-GGA-GGGGGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 143918 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 143892 0.66 0.547417
Target:  5'- ---gCCCaUCCCCCaCCCcagcACCCCggggugacguggcaCCCCg -3'
miRNA:   3'- auuaGGG-AGGGGG-GGGa---UGGGG--------------GGGG- -5'
33600 5' -64.2 NC_007605.1 + 143847 1.09 0.000663
Target:  5'- gUAAUCCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- -AUUAGGGAGGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 143723 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 143678 0.67 0.531528
Target:  5'- aGGUUCCUacugggguaCCCCCCUACCCUaCCUu -3'
miRNA:   3'- aUUAGGGAgg-------GGGGGGAUGGGGgGGG- -5'
33600 5' -64.2 NC_007605.1 + 140849 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 140655 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 137780 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 137586 0.66 0.588207
Target:  5'- ---aCCCgggcgaUCCCCCUCC-ACUUCCCCg -3'
miRNA:   3'- auuaGGG------AGGGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 136607 0.67 0.485858
Target:  5'- ----aCCaCCCCCaCCCacACCCCCCuCCg -3'
miRNA:   3'- auuagGGaGGGGG-GGGa-UGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 136428 0.67 0.513054
Target:  5'- ---aCCCUacgcggCCCCgCUGCCCCCCUUu -3'
miRNA:   3'- auuaGGGAgg----GGGGgGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 134414 0.81 0.067641
Target:  5'- ---cCCCUgCCCCugCCCCUGCCCCUCCCc -3'
miRNA:   3'- auuaGGGA-GGGG--GGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 133523 0.67 0.485858
Target:  5'- --cUCaCCUacaugucaaCCgCCUCUACCCUCCCCa -3'
miRNA:   3'- auuAG-GGAg--------GGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 133397 0.69 0.384874
Target:  5'- cAGUCUCaaUCUCUCCCacggACCCCCCUCu -3'
miRNA:   3'- aUUAGGG--AGGGGGGGga--UGGGGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.