miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 116566 0.69 0.400731
Target:  5'- -cAUCCgUgCCCCCCU--CCCCCCgCg -3'
miRNA:   3'- auUAGGgAgGGGGGGGauGGGGGGgG- -5'
33600 5' -64.2 NC_007605.1 + 115900 0.66 0.578658
Target:  5'- -cAUCUCUCCCgCCUCU-CCCUCUgCg -3'
miRNA:   3'- auUAGGGAGGGgGGGGAuGGGGGGgG- -5'
33600 5' -64.2 NC_007605.1 + 115606 0.68 0.442138
Target:  5'- aGAUCa-UCgCCUCCCUGCCUCUCCUa -3'
miRNA:   3'- aUUAGggAGgGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115399 0.72 0.250147
Target:  5'- ---cCCCUCCCgCCgCCUcaguGCCCCCCUUu -3'
miRNA:   3'- auuaGGGAGGGgGG-GGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115367 0.66 0.597783
Target:  5'- --cUCCCagcguggCCCaaCCUCUGCUCCCCUCu -3'
miRNA:   3'- auuAGGGa------GGGg-GGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115212 0.68 0.468113
Target:  5'- cAGUCCCUgCUcggCCUCCgccGCCUUCCCCa -3'
miRNA:   3'- aUUAGGGAgGG---GGGGGa--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 115172 0.66 0.569143
Target:  5'- ---aCCCUCgagagUgCCCCCgACCCgaCCCCCa -3'
miRNA:   3'- auuaGGGAG-----GgGGGGGaUGGG--GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 114231 0.66 0.569143
Target:  5'- --uUCuCCUCUUCCUCCUcagcagcaGCCCCUgCCa -3'
miRNA:   3'- auuAG-GGAGGGGGGGGA--------UGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 114014 0.7 0.35443
Target:  5'- aAAUCCCUCUgaCCaCCCCauCCCCuuCCCCg -3'
miRNA:   3'- aUUAGGGAGG--GG-GGGGauGGGG--GGGG- -5'
33600 5' -64.2 NC_007605.1 + 113874 0.74 0.200614
Target:  5'- -cAUCCCUCaccaaucaccacccgCCUCCCCgacACCCCaCCCCg -3'
miRNA:   3'- auUAGGGAG---------------GGGGGGGa--UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 113827 0.7 0.35517
Target:  5'- ---cCCCaUCgCCCCCCUucagcagcucgccuuCCCCCUCCa -3'
miRNA:   3'- auuaGGG-AGgGGGGGGAu--------------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 113604 0.7 0.361879
Target:  5'- ---gCCCUCCCCUCUUcauCCCCauCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGau-GGGG--GGGG- -5'
33600 5' -64.2 NC_007605.1 + 112689 0.67 0.52226
Target:  5'- --uUCCUggccggCCgCCCCCUgACCUCCCgCCc -3'
miRNA:   3'- auuAGGGa-----GGgGGGGGA-UGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 110762 0.67 0.493947
Target:  5'- ---cCCCUCCgaugccugggaguCCCCCCaggcggucggacUGCgCCCCCUCa -3'
miRNA:   3'- auuaGGGAGG-------------GGGGGG------------AUG-GGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 110680 0.68 0.459366
Target:  5'- ---gCCCUCCCuuCCCCCgagcugACCCgggCCCgCCg -3'
miRNA:   3'- auuaGGGAGGG--GGGGGa-----UGGG---GGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 110390 0.78 0.114281
Target:  5'- --cUCCggCCCUCCCCUguaaGCCCCCCCUa -3'
miRNA:   3'- auuAGGgaGGGGGGGGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 110181 0.66 0.550237
Target:  5'- ---cCCCUCUacgCCCgCCgccGCCCCCgCCg -3'
miRNA:   3'- auuaGGGAGG---GGGgGGa--UGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 108535 0.71 0.285974
Target:  5'- ---cCCCUCCacugccaCCCCCggcgaccgccACCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGg------GGGGGa---------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 108291 0.72 0.272993
Target:  5'- aGGUCCUgggCCUCCCaCCaccguuaUGCCUCCCCCu -3'
miRNA:   3'- aUUAGGGa--GGGGGG-GG-------AUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 107642 0.72 0.26166
Target:  5'- ---cCCCUCCUCCUCCUGuuUCCUCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGAU--GGGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.