miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 15160 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 29177 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 32246 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 169517 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 170054 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 170577 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 171114 0.75 0.172523
Target:  5'- --uUCCC-CCgcggCCCCCCaGCCCCCCCg -3'
miRNA:   3'- auuAGGGaGG----GGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 36363 0.75 0.176668
Target:  5'- --cUCCCaccaCCCCCCCC-ACCaccaCCCCCa -3'
miRNA:   3'- auuAGGGa---GGGGGGGGaUGGg---GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 12115 0.75 0.178351
Target:  5'- -uGUUCCUCCCCcgguccccaguagggCCgCCUGCCCCCCUg -3'
miRNA:   3'- auUAGGGAGGGG---------------GG-GGAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 26108 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 23039 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19970 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 143847 1.09 0.000663
Target:  5'- gUAAUCCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- -AUUAGGGAGGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 39980 0.83 0.049871
Target:  5'- gGGUCCCgggacgCCCCCuCCCUGCUCCCaCCCg -3'
miRNA:   3'- aUUAGGGa-----GGGGG-GGGAUGGGGG-GGG- -5'
33600 5' -64.2 NC_007605.1 + 166222 0.79 0.084828
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 62119 0.78 0.1115
Target:  5'- ---aCCCUCUCCCCCgCcgGCCCCgCCCCc -3'
miRNA:   3'- auuaGGGAGGGGGGG-Ga-UGGGG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 153262 0.76 0.153074
Target:  5'- -cGUCUUUCUCgCCCCCUucACUCCCCCCu -3'
miRNA:   3'- auUAGGGAGGG-GGGGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 22935 0.76 0.156798
Target:  5'- aGGUgCCUCCagagCCCCUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGGg---GGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13833 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 16902 0.75 0.160603
Target:  5'- ---cCCCUCCCgCCCCUGuCCacugccccgguCCCCCCa -3'
miRNA:   3'- auuaGGGAGGGgGGGGAU-GG-----------GGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.