miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 12115 0.75 0.178351
Target:  5'- -uGUUCCUCCCCcgguccccaguagggCCgCCUGCCCCCCUg -3'
miRNA:   3'- auUAGGGAGGGG---------------GG-GGAUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 15160 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 19866 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 26003 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 29072 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 32141 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 35210 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 59477 0.73 0.233666
Target:  5'- aGAUCugCCUCCCCUCCCU-CUCCCUCg -3'
miRNA:   3'- aUUAG--GGAGGGGGGGGAuGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 13109 0.72 0.250147
Target:  5'- ---cCCCUCuCCUCCCCUccaggcccgaGCCUCUCCCu -3'
miRNA:   3'- auuaGGGAG-GGGGGGGA----------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 14414 0.72 0.250147
Target:  5'- ----aCCUCUCCCuagCCCUccGCCCCCUCCa -3'
miRNA:   3'- auuagGGAGGGGG---GGGA--UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 16797 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 13728 0.73 0.223192
Target:  5'- aGGUgCCUCCagagCCCCUUUugCCCCCCUg -3'
miRNA:   3'- aUUAgGGAGG----GGGGGGAugGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 18229 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 21298 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 24367 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 27436 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 30505 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 33574 0.74 0.18964
Target:  5'- ---cCCCUCCCcguCCCCCUucgcuccugauCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGG---GGGGGAu----------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 12067 0.74 0.18964
Target:  5'- ---cCCCUCCugCCaCCCCaGCCUCCCCCc -3'
miRNA:   3'- auuaGGGAGG--GG-GGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75287 0.74 0.194147
Target:  5'- gGAUCCaaaccCCCUCCCCUGuCUCCCCUCg -3'
miRNA:   3'- aUUAGGga---GGGGGGGGAU-GGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.