miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 110390 0.78 0.114281
Target:  5'- --cUCCggCCCUCCCCUguaaGCCCCCCCUa -3'
miRNA:   3'- auuAGGgaGGGGGGGGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75532 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75316 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75451 0.79 0.084828
Target:  5'- ---cCCCUCcugCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 924 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 75682 0.77 0.132374
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75124 0.78 0.106126
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 134414 0.81 0.067641
Target:  5'- ---cCCCUgCCCCugCCCCUGCCCCUCCCc -3'
miRNA:   3'- auuaGGGA-GGGG--GGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1906 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 131450 0.82 0.05248
Target:  5'- gGGUCCCaggaccacgCCCCUCCCUcacuGCCCCCCCCc -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGA----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75250 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 308 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75496 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75340 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75190 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75718 0.79 0.084828
Target:  5'- ---cCCCUCcugCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 121725 0.73 0.243442
Target:  5'- gUGGUCCCcuccggaUCCCCCUCCUcucuaucACCgCCgCCCCg -3'
miRNA:   3'- -AUUAGGG-------AGGGGGGGGA-------UGG-GG-GGGG- -5'
33600 5' -64.2 NC_007605.1 + 1446 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 1984 0.74 0.185226
Target:  5'- cUGcgCCCgcgcgCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 75745 0.77 0.132374
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.