miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 1446 0.74 0.208233
Target:  5'- cUGcgCCCgcgcggCgCCCCCCgACCCCCCCg -3'
miRNA:   3'- -AUuaGGGa-----GgGGGGGGaUGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 117758 0.72 0.26166
Target:  5'- --uUCCCUCCCgcccaaagCCCCUguccagGCUCCCCUCg -3'
miRNA:   3'- auuAGGGAGGG--------GGGGGa-----UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20 0.79 0.086977
Target:  5'- aAAUCCgaCCCCCCCaUGCCCCCgCCa -3'
miRNA:   3'- aUUAGGgaGGGGGGGgAUGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 75214 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75370 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75577 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75613 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 308 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75682 0.77 0.132374
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 76155 0.74 0.185226
Target:  5'- --cUCCUgCCCCCUCCaacaGCCCCCCCa -3'
miRNA:   3'- auuAGGGaGGGGGGGGa---UGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 1326 0.68 0.476945
Target:  5'- -uGUCCCcgCCCCCUgucauUCUACCCUCCa- -3'
miRNA:   3'- auUAGGGa-GGGGGG-----GGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 118386 0.68 0.476945
Target:  5'- -cAUCCCUUgaCCaacaaCCUGCCCCUCCUc -3'
miRNA:   3'- auUAGGGAGggGGg----GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 108535 0.71 0.285974
Target:  5'- ---cCCCUCCacugccaCCCCCggcgaccgccACCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGg------GGGGGa---------UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 160459 0.71 0.312034
Target:  5'- uUAAUCCCgCCCguaggaCCCCUUugCCCagCCCCg -3'
miRNA:   3'- -AUUAGGGaGGG------GGGGGAugGGG--GGGG- -5'
33600 5' -64.2 NC_007605.1 + 113827 0.7 0.35517
Target:  5'- ---cCCCaUCgCCCCCCUucagcagcucgccuuCCCCCUCCa -3'
miRNA:   3'- auuaGGG-AGgGGGGGGAu--------------GGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 2837 0.69 0.377102
Target:  5'- ---gCCCgcgacggCCCCCUCgaggACCCCCCCUc -3'
miRNA:   3'- auuaGGGag-----GGGGGGGa---UGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 80211 0.69 0.388012
Target:  5'- gGAUCCCcgugggccaaccggCCCCUgCCUGCCUcuuuggcucccaCCCCCa -3'
miRNA:   3'- aUUAGGGa-------------GGGGGgGGAUGGG------------GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 34855 0.69 0.425282
Target:  5'- ----gCgUCCUCCCCCgggaauaGCCCCCCgCCu -3'
miRNA:   3'- auuagGgAGGGGGGGGa------UGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 115606 0.68 0.442138
Target:  5'- aGAUCa-UCgCCUCCCUGCCUCUCCUa -3'
miRNA:   3'- aUUAGggAGgGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 110680 0.68 0.459366
Target:  5'- ---gCCCUCCCuuCCCCCgagcugACCCgggCCCgCCg -3'
miRNA:   3'- auuaGGGAGGG--GGGGGa-----UGGG---GGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.