miRNA display CGI


Results 81 - 100 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33600 5' -64.2 NC_007605.1 + 71533 0.71 0.305354
Target:  5'- aAAUUCUgCCCCCCUCUGCUCCCUg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 99247 0.7 0.35443
Target:  5'- cUAAUCCagaggaCCCgcgagaCCCUGCCCCCCaCCg -3'
miRNA:   3'- -AUUAGGgag---GGGg-----GGGAUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 113604 0.7 0.361879
Target:  5'- ---gCCCUCCCCUCUUcauCCCCauCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGau-GGGG--GGGG- -5'
33600 5' -64.2 NC_007605.1 + 578 0.69 0.384874
Target:  5'- ---cCCCaugCCCCaCCCCccgAUgCCCCCCg -3'
miRNA:   3'- auuaGGGa--GGGG-GGGGa--UGgGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 993 0.69 0.416998
Target:  5'- ---cCCCgggCCCgcggaCCCCgACCCCCCgCCg -3'
miRNA:   3'- auuaGGGa--GGGg----GGGGaUGGGGGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 115606 0.68 0.442138
Target:  5'- aGAUCa-UCgCCUCCCUGCCUCUCCUa -3'
miRNA:   3'- aUUAGggAGgGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 110680 0.68 0.459366
Target:  5'- ---gCCCUCCCuuCCCCCgagcugACCCgggCCCgCCg -3'
miRNA:   3'- auuaGGGAGGG--GGGGGa-----UGGG---GGG-GG- -5'
33600 5' -64.2 NC_007605.1 + 76155 0.74 0.185226
Target:  5'- --cUCCUgCCCCCUCCaacaGCCCCCCCa -3'
miRNA:   3'- auuAGGGaGGGGGGGGa---UGGGGGGGg -5'
33600 5' -64.2 NC_007605.1 + 75682 0.77 0.132374
Target:  5'- ---cCCCUCCUCCUgcuCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAGGGGGG---GGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 308 0.77 0.129185
Target:  5'- --cUCCCgcgCCgCCCCCCgcuCCCgCCCCCa -3'
miRNA:   3'- auuAGGGa--GG-GGGGGGau-GGG-GGGGG- -5'
33600 5' -64.2 NC_007605.1 + 133523 0.67 0.485858
Target:  5'- --cUCaCCUacaugucaaCCgCCUCUACCCUCCCCa -3'
miRNA:   3'- auuAG-GGAg--------GGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 1797 0.67 0.49485
Target:  5'- --cUCCauugCCCgCUCCCcGCCCCCCUUg -3'
miRNA:   3'- auuAGGga--GGG-GGGGGaUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 140849 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 153125 0.67 0.513054
Target:  5'- ---gCCCUgCCUgUCUCUGCCCCCCg- -3'
miRNA:   3'- auuaGGGA-GGGgGGGGAUGGGGGGgg -5'
33600 5' -64.2 NC_007605.1 + 28104 0.67 0.513054
Target:  5'- ---aUCCUCCCCCUCCUgguucaACCcuauggaggggaCCCUCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGGA------UGG------------GGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 20 0.79 0.086977
Target:  5'- aAAUCCgaCCCCCCCaUGCCCCCgCCa -3'
miRNA:   3'- aUUAGGgaGGGGGGGgAUGGGGGgGG- -5'
33600 5' -64.2 NC_007605.1 + 75214 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75370 0.79 0.091431
Target:  5'- ---cCCCUCCUgCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75577 0.79 0.096101
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUg -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5'
33600 5' -64.2 NC_007605.1 + 75613 0.78 0.1115
Target:  5'- ---cUCCUgCCCCUCCUGCCCCUCCUc -3'
miRNA:   3'- auuaGGGAgGGGGGGGAUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.