miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33601 3' -51.6 NC_007605.1 + 117557 0.66 0.98968
Target:  5'- -gGGAcuucuucuCGgAGCUGC-UGACCgagGCCg -3'
miRNA:   3'- aaCCU--------GCgUCGAUGaACUGGaaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 12769 0.66 0.98968
Target:  5'- cUGGGgGCGGUc-CUUGAuCCUgcGCCg -3'
miRNA:   3'- aACCUgCGUCGauGAACU-GGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 96267 0.66 0.988242
Target:  5'- gUGGGC-CAGCUGC---ACCUUcgaggaggUGCCg -3'
miRNA:   3'- aACCUGcGUCGAUGaacUGGAA--------ACGG- -5'
33601 3' -51.6 NC_007605.1 + 171259 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 170721 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 170199 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 169661 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 68276 0.66 0.984905
Target:  5'- -cGGACucgcugGCGGCggcGCUUaGCCUcUGCCg -3'
miRNA:   3'- aaCCUG------CGUCGa--UGAAcUGGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 74103 0.66 0.982987
Target:  5'- -gGGACGCAGCcACgccacgcGGCCUcUGgCa -3'
miRNA:   3'- aaCCUGCGUCGaUGaa-----CUGGAaACgG- -5'
33601 3' -51.6 NC_007605.1 + 108103 0.66 0.982987
Target:  5'- --uGACGguGCUGCgagggaUGGCCU-UGCUg -3'
miRNA:   3'- aacCUGCguCGAUGa-----ACUGGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 117388 0.66 0.982785
Target:  5'- -cGGACGCuacccgaAGCcACUaaUGACCcagGCCa -3'
miRNA:   3'- aaCCUGCG-------UCGaUGA--ACUGGaaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 137805 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 140874 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 147012 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 156219 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 150081 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 4060 0.67 0.98089
Target:  5'- cUGGGCGUgaAGCUgaccuuugGCUcGGCCUccUGCCc -3'
miRNA:   3'- aACCUGCG--UCGA--------UGAaCUGGAa-ACGG- -5'
33601 3' -51.6 NC_007605.1 + 143943 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 159288 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 153150 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.