miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33601 3' -51.6 NC_007605.1 + 147012 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 117928 0.67 0.970547
Target:  5'- -gGGGCGCGGgUGCcUGGCUgaaccuaGCCg -3'
miRNA:   3'- aaCCUGCGUCgAUGaACUGGaaa----CGG- -5'
33601 3' -51.6 NC_007605.1 + 42337 0.67 0.970547
Target:  5'- cUUGGGCGC-GCg--UUGGCCUggaugGCCu -3'
miRNA:   3'- -AACCUGCGuCGaugAACUGGAaa---CGG- -5'
33601 3' -51.6 NC_007605.1 + 2385 0.67 0.975607
Target:  5'- uUUGGugGCagGGCUGCUggUGGCagacagcugGCCg -3'
miRNA:   3'- -AACCugCG--UCGAUGA--ACUGgaaa-----CGG- -5'
33601 3' -51.6 NC_007605.1 + 164289 0.68 0.952226
Target:  5'- -gGGGCGUGaauuuucGCUGCUUGuCCUUuuccugcaUGCCg -3'
miRNA:   3'- aaCCUGCGU-------CGAUGAACuGGAA--------ACGG- -5'
33601 3' -51.6 NC_007605.1 + 109073 0.68 0.956702
Target:  5'- --aGGCGCAGCUuc--GGCCUcgGCCa -3'
miRNA:   3'- aacCUGCGUCGAugaaCUGGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 58100 0.68 0.960515
Target:  5'- cUUGGACcCuGCUGCgauuuucUGACCUUUacaGCCg -3'
miRNA:   3'- -AACCUGcGuCGAUGa------ACUGGAAA---CGG- -5'
33601 3' -51.6 NC_007605.1 + 76465 0.68 0.960515
Target:  5'- -aGGAuccagugacccCGCAguGCUGCUUgGACCUggagGCCg -3'
miRNA:   3'- aaCCU-----------GCGU--CGAUGAA-CUGGAaa--CGG- -5'
33601 3' -51.6 NC_007605.1 + 81019 0.68 0.94834
Target:  5'- gUGGcCGguGCUGCcaGAgCCUcUGCCa -3'
miRNA:   3'- aACCuGCguCGAUGaaCU-GGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 44915 0.68 0.960515
Target:  5'- aUGGugGCAGUUGC--GGCCUUaaaCCa -3'
miRNA:   3'- aACCugCGUCGAUGaaCUGGAAac-GG- -5'
33601 3' -51.6 NC_007605.1 + 147903 0.68 0.967431
Target:  5'- -cGG-UGCGGCUGCcccgUGACCcguggGCCu -3'
miRNA:   3'- aaCCuGCGUCGAUGa---ACUGGaaa--CGG- -5'
33601 3' -51.6 NC_007605.1 + 80196 0.68 0.956702
Target:  5'- aUUGGAgcCGCGGCUACggUGAgcaucCCUaugGCCu -3'
miRNA:   3'- -AACCU--GCGUCGAUGa-ACU-----GGAaa-CGG- -5'
33601 3' -51.6 NC_007605.1 + 71956 0.68 0.96409
Target:  5'- -gGGAUGUAGUgcuguCUUGACUg--GCCu -3'
miRNA:   3'- aaCCUGCGUCGau---GAACUGGaaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 149965 0.68 0.967431
Target:  5'- -gGGAgGCAGCU-CUUGGCaCUgcGCg -3'
miRNA:   3'- aaCCUgCGUCGAuGAACUG-GAaaCGg -5'
33601 3' -51.6 NC_007605.1 + 49348 0.69 0.93748
Target:  5'- -cGGACagaGCAGaCUguuuuggugaacggGCUggUGGCCUUUGCCu -3'
miRNA:   3'- aaCCUG---CGUC-GA--------------UGA--ACUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 75997 0.69 0.922997
Target:  5'- -cGGGCGCAGCaggaugguggucUugUUGACCaaggugaGCCg -3'
miRNA:   3'- aaCCUGCGUCG------------AugAACUGGaaa----CGG- -5'
33601 3' -51.6 NC_007605.1 + 66186 0.7 0.904697
Target:  5'- cUGGuGCGCAGCUAC--GAgCUggGCCu -3'
miRNA:   3'- aACC-UGCGUCGAUGaaCUgGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 97793 0.7 0.898088
Target:  5'- aUGGGCGgAGCaACcgaGGCUUUUGCCc -3'
miRNA:   3'- aACCUGCgUCGaUGaa-CUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 112746 0.7 0.904697
Target:  5'- -gGGGCGCGGCUGgaUGcCCUcaugcGCCa -3'
miRNA:   3'- aaCCUGCGUCGAUgaACuGGAaa---CGG- -5'
33601 3' -51.6 NC_007605.1 + 7622 0.7 0.911053
Target:  5'- -gGGAC-CGGCUACgcgGGCCacaggUGCCu -3'
miRNA:   3'- aaCCUGcGUCGAUGaa-CUGGaa---ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.