Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33601 | 3' | -51.6 | NC_007605.1 | + | 164289 | 0.68 | 0.952226 |
Target: 5'- -gGGGCGUGaauuuucGCUGCUUGuCCUUuuccugcaUGCCg -3' miRNA: 3'- aaCCUGCGU-------CGAUGAACuGGAA--------ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 44915 | 0.68 | 0.960515 |
Target: 5'- aUGGugGCAGUUGC--GGCCUUaaaCCa -3' miRNA: 3'- aACCugCGUCGAUGaaCUGGAAac-GG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 80196 | 0.68 | 0.956702 |
Target: 5'- aUUGGAgcCGCGGCUACggUGAgcaucCCUaugGCCu -3' miRNA: 3'- -AACCU--GCGUCGAUGa-ACU-----GGAaa-CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 71956 | 0.68 | 0.96409 |
Target: 5'- -gGGAUGUAGUgcuguCUUGACUg--GCCu -3' miRNA: 3'- aaCCUGCGUCGau---GAACUGGaaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 149965 | 0.68 | 0.967431 |
Target: 5'- -gGGAgGCAGCU-CUUGGCaCUgcGCg -3' miRNA: 3'- aaCCUgCGUCGAuGAACUG-GAaaCGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 147903 | 0.68 | 0.967431 |
Target: 5'- -cGG-UGCGGCUGCcccgUGACCcguggGCCu -3' miRNA: 3'- aaCCuGCGUCGAUGa---ACUGGaaa--CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 153150 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 143943 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 140874 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 137805 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 117928 | 0.67 | 0.970547 |
Target: 5'- -gGGGCGCGGgUGCcUGGCUgaaccuaGCCg -3' miRNA: 3'- aaCCUGCGUCgAUGaACUGGaaa----CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 150081 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 159288 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 156219 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 42337 | 0.67 | 0.970547 |
Target: 5'- cUUGGGCGC-GCg--UUGGCCUggaugGCCu -3' miRNA: 3'- -AACCUGCGuCGaugAACUGGAaa---CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 2385 | 0.67 | 0.975607 |
Target: 5'- uUUGGugGCagGGCUGCUggUGGCagacagcugGCCg -3' miRNA: 3'- -AACCugCG--UCGAUGA--ACUGgaaa-----CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 130461 | 0.67 | 0.976127 |
Target: 5'- cUGGGCuaaGGCcugg-GACCUUUGCCa -3' miRNA: 3'- aACCUGcg-UCGaugaaCUGGAAACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 4060 | 0.67 | 0.98089 |
Target: 5'- cUGGGCGUgaAGCUgaccuuugGCUcGGCCUccUGCCc -3' miRNA: 3'- aACCUGCG--UCGA--------UGAaCUGGAa-ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 147012 | 0.67 | 0.98089 |
Target: 5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3' miRNA: 3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 12769 | 0.66 | 0.98968 |
Target: 5'- cUGGGgGCGGUc-CUUGAuCCUgcGCCg -3' miRNA: 3'- aACCUgCGUCGauGAACU-GGAaaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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