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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33601 | 3' | -51.6 | NC_007605.1 | + | 108103 | 0.66 | 0.982987 |
Target: 5'- --uGACGguGCUGCgagggaUGGCCU-UGCUg -3' miRNA: 3'- aacCUGCguCGAUGa-----ACUGGAaACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 74103 | 0.66 | 0.982987 |
Target: 5'- -gGGACGCAGCcACgccacgcGGCCUcUGgCa -3' miRNA: 3'- aaCCUGCGUCGaUGaa-----CUGGAaACgG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 68276 | 0.66 | 0.984905 |
Target: 5'- -cGGACucgcugGCGGCggcGCUUaGCCUcUGCCg -3' miRNA: 3'- aaCCUG------CGUCGa--UGAAcUGGAaACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 170199 | 0.66 | 0.985974 |
Target: 5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3' miRNA: 3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 170721 | 0.66 | 0.985974 |
Target: 5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3' miRNA: 3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 171259 | 0.66 | 0.985974 |
Target: 5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3' miRNA: 3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 169661 | 0.66 | 0.985974 |
Target: 5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3' miRNA: 3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 96267 | 0.66 | 0.988242 |
Target: 5'- gUGGGC-CAGCUGC---ACCUUcgaggaggUGCCg -3' miRNA: 3'- aACCUGcGUCGAUGaacUGGAA--------ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 117557 | 0.66 | 0.98968 |
Target: 5'- -gGGAcuucuucuCGgAGCUGC-UGACCgagGCCg -3' miRNA: 3'- aaCCU--------GCgUCGAUGaACUGGaaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 12769 | 0.66 | 0.98968 |
Target: 5'- cUGGGgGCGGUc-CUUGAuCCUgcGCCg -3' miRNA: 3'- aACCUgCGUCGauGAACU-GGAaaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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