Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33601 | 3' | -51.6 | NC_007605.1 | + | 130461 | 0.67 | 0.976127 |
Target: 5'- cUGGGCuaaGGCcugg-GACCUUUGCCa -3' miRNA: 3'- aACCUGcg-UCGaugaaCUGGAAACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 2385 | 0.67 | 0.975607 |
Target: 5'- uUUGGugGCagGGCUGCUggUGGCagacagcugGCCg -3' miRNA: 3'- -AACCugCG--UCGAUGA--ACUGgaaa-----CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 117928 | 0.67 | 0.970547 |
Target: 5'- -gGGGCGCGGgUGCcUGGCUgaaccuaGCCg -3' miRNA: 3'- aaCCUGCGUCgAUGaACUGGaaa----CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 42337 | 0.67 | 0.970547 |
Target: 5'- cUUGGGCGC-GCg--UUGGCCUggaugGCCu -3' miRNA: 3'- -AACCUGCGuCGaugAACUGGAaa---CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 147903 | 0.68 | 0.967431 |
Target: 5'- -cGG-UGCGGCUGCcccgUGACCcguggGCCu -3' miRNA: 3'- aaCCuGCGUCGAUGa---ACUGGaaa--CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 149965 | 0.68 | 0.967431 |
Target: 5'- -gGGAgGCAGCU-CUUGGCaCUgcGCg -3' miRNA: 3'- aaCCUgCGUCGAuGAACUG-GAaaCGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 71956 | 0.68 | 0.96409 |
Target: 5'- -gGGAUGUAGUgcuguCUUGACUg--GCCu -3' miRNA: 3'- aaCCUGCGUCGau---GAACUGGaaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 44915 | 0.68 | 0.960515 |
Target: 5'- aUGGugGCAGUUGC--GGCCUUaaaCCa -3' miRNA: 3'- aACCugCGUCGAUGaaCUGGAAac-GG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 76465 | 0.68 | 0.960515 |
Target: 5'- -aGGAuccagugacccCGCAguGCUGCUUgGACCUggagGCCg -3' miRNA: 3'- aaCCU-----------GCGU--CGAUGAA-CUGGAaa--CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 58100 | 0.68 | 0.960515 |
Target: 5'- cUUGGACcCuGCUGCgauuuucUGACCUUUacaGCCg -3' miRNA: 3'- -AACCUGcGuCGAUGa------ACUGGAAA---CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 80196 | 0.68 | 0.956702 |
Target: 5'- aUUGGAgcCGCGGCUACggUGAgcaucCCUaugGCCu -3' miRNA: 3'- -AACCU--GCGUCGAUGa-ACU-----GGAaa-CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 109073 | 0.68 | 0.956702 |
Target: 5'- --aGGCGCAGCUuc--GGCCUcgGCCa -3' miRNA: 3'- aacCUGCGUCGAugaaCUGGAaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 164289 | 0.68 | 0.952226 |
Target: 5'- -gGGGCGUGaauuuucGCUGCUUGuCCUUuuccugcaUGCCg -3' miRNA: 3'- aaCCUGCGU-------CGAUGAACuGGAA--------ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 81019 | 0.68 | 0.94834 |
Target: 5'- gUGGcCGguGCUGCcaGAgCCUcUGCCa -3' miRNA: 3'- aACCuGCguCGAUGaaCU-GGAaACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 49348 | 0.69 | 0.93748 |
Target: 5'- -cGGACagaGCAGaCUguuuuggugaacggGCUggUGGCCUUUGCCu -3' miRNA: 3'- aaCCUG---CGUC-GA--------------UGA--ACUGGAAACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 75997 | 0.69 | 0.922997 |
Target: 5'- -cGGGCGCAGCaggaugguggucUugUUGACCaaggugaGCCg -3' miRNA: 3'- aaCCUGCGUCG------------AugAACUGGaaa----CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 7622 | 0.7 | 0.911053 |
Target: 5'- -gGGAC-CGGCUACgcgGGCCacaggUGCCu -3' miRNA: 3'- aaCCUGcGUCGAUGaa-CUGGaa---ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 66186 | 0.7 | 0.904697 |
Target: 5'- cUGGuGCGCAGCUAC--GAgCUggGCCu -3' miRNA: 3'- aACC-UGCGUCGAUGaaCUgGAaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 112746 | 0.7 | 0.904697 |
Target: 5'- -gGGGCGCGGCUGgaUGcCCUcaugcGCCa -3' miRNA: 3'- aaCCUGCGUCGAUgaACuGGAaa---CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 97793 | 0.7 | 0.898088 |
Target: 5'- aUGGGCGgAGCaACcgaGGCUUUUGCCc -3' miRNA: 3'- aACCUGCgUCGaUGaa-CUGGAAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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