miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33601 3' -51.6 NC_007605.1 + 2385 0.67 0.975607
Target:  5'- uUUGGugGCagGGCUGCUggUGGCagacagcugGCCg -3'
miRNA:   3'- -AACCugCG--UCGAUGA--ACUGgaaa-----CGG- -5'
33601 3' -51.6 NC_007605.1 + 4060 0.67 0.98089
Target:  5'- cUGGGCGUgaAGCUgaccuuugGCUcGGCCUccUGCCc -3'
miRNA:   3'- aACCUGCG--UCGA--------UGAaCUGGAa-ACGG- -5'
33601 3' -51.6 NC_007605.1 + 7622 0.7 0.911053
Target:  5'- -gGGAC-CGGCUACgcgGGCCacaggUGCCu -3'
miRNA:   3'- aaCCUGcGUCGAUGaa-CUGGaa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 9576 0.72 0.83662
Target:  5'- cUGGACGCGGCccUGCagGGCCggguguacgGCCg -3'
miRNA:   3'- aACCUGCGUCG--AUGaaCUGGaaa------CGG- -5'
33601 3' -51.6 NC_007605.1 + 10992 0.72 0.818202
Target:  5'- cUGGACGUGGCUGCggUGgugcgcaacgccgGCCUgcugGCCg -3'
miRNA:   3'- aACCUGCGUCGAUGa-AC-------------UGGAaa--CGG- -5'
33601 3' -51.6 NC_007605.1 + 12769 0.66 0.98968
Target:  5'- cUGGGgGCGGUc-CUUGAuCCUgcGCCg -3'
miRNA:   3'- aACCUgCGUCGauGAACU-GGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 36541 0.77 0.552178
Target:  5'- gUGGGCGCAGCUuggacugcgcaggGCgccgGACCUgaGCCa -3'
miRNA:   3'- aACCUGCGUCGA-------------UGaa--CUGGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 41033 0.75 0.690778
Target:  5'- -aGGAUGCAGUUGCUcUGugUuuUUUGCCu -3'
miRNA:   3'- aaCCUGCGUCGAUGA-ACugG--AAACGG- -5'
33601 3' -51.6 NC_007605.1 + 42337 0.67 0.970547
Target:  5'- cUUGGGCGC-GCg--UUGGCCUggaugGCCu -3'
miRNA:   3'- -AACCUGCGuCGaugAACUGGAaa---CGG- -5'
33601 3' -51.6 NC_007605.1 + 44915 0.68 0.960515
Target:  5'- aUGGugGCAGUUGC--GGCCUUaaaCCa -3'
miRNA:   3'- aACCugCGUCGAUGaaCUGGAAac-GG- -5'
33601 3' -51.6 NC_007605.1 + 49348 0.69 0.93748
Target:  5'- -cGGACagaGCAGaCUguuuuggugaacggGCUggUGGCCUUUGCCu -3'
miRNA:   3'- aaCCUG---CGUC-GA--------------UGA--ACUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 50455 0.73 0.781921
Target:  5'- gUGGGCaggGCAGCUGCaucuuggGGCCUUUGUg -3'
miRNA:   3'- aACCUG---CGUCGAUGaa-----CUGGAAACGg -5'
33601 3' -51.6 NC_007605.1 + 58100 0.68 0.960515
Target:  5'- cUUGGACcCuGCUGCgauuuucUGACCUUUacaGCCg -3'
miRNA:   3'- -AACCUGcGuCGAUGa------ACUGGAAA---CGG- -5'
33601 3' -51.6 NC_007605.1 + 58981 0.74 0.752479
Target:  5'- -aGGACGCAGUUGCU-GACgcaCUggaUGCCg -3'
miRNA:   3'- aaCCUGCGUCGAUGAaCUG---GAa--ACGG- -5'
33601 3' -51.6 NC_007605.1 + 66186 0.7 0.904697
Target:  5'- cUGGuGCGCAGCUAC--GAgCUggGCCu -3'
miRNA:   3'- aACC-UGCGUCGAUGaaCUgGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 68276 0.66 0.984905
Target:  5'- -cGGACucgcugGCGGCggcGCUUaGCCUcUGCCg -3'
miRNA:   3'- aaCCUG------CGUCGa--UGAAcUGGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 71956 0.68 0.96409
Target:  5'- -gGGAUGUAGUgcuguCUUGACUg--GCCu -3'
miRNA:   3'- aaCCUGCGUCGau---GAACUGGaaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 74103 0.66 0.982987
Target:  5'- -gGGACGCAGCcACgccacgcGGCCUcUGgCa -3'
miRNA:   3'- aaCCUGCGUCGaUGaa-----CUGGAaACgG- -5'
33601 3' -51.6 NC_007605.1 + 75997 0.69 0.922997
Target:  5'- -cGGGCGCAGCaggaugguggucUugUUGACCaaggugaGCCg -3'
miRNA:   3'- aaCCUGCGUCG------------AugAACUGGaaa----CGG- -5'
33601 3' -51.6 NC_007605.1 + 76465 0.68 0.960515
Target:  5'- -aGGAuccagugacccCGCAguGCUGCUUgGACCUggagGCCg -3'
miRNA:   3'- aaCCU-----------GCGU--CGAUGAA-CUGGAaa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.