miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33601 3' -51.6 NC_007605.1 + 80196 0.68 0.956702
Target:  5'- aUUGGAgcCGCGGCUACggUGAgcaucCCUaugGCCu -3'
miRNA:   3'- -AACCU--GCGUCGAUGa-ACU-----GGAaa-CGG- -5'
33601 3' -51.6 NC_007605.1 + 81019 0.68 0.94834
Target:  5'- gUGGcCGguGCUGCcaGAgCCUcUGCCa -3'
miRNA:   3'- aACCuGCguCGAUGaaCU-GGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 96267 0.66 0.988242
Target:  5'- gUGGGC-CAGCUGC---ACCUUcgaggaggUGCCg -3'
miRNA:   3'- aACCUGcGUCGAUGaacUGGAA--------ACGG- -5'
33601 3' -51.6 NC_007605.1 + 97793 0.7 0.898088
Target:  5'- aUGGGCGgAGCaACcgaGGCUUUUGCCc -3'
miRNA:   3'- aACCUGCgUCGaUGaa-CUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 101613 0.74 0.752479
Target:  5'- gUGGAgGCAGCUaacGCUgGugCUcUUGCCa -3'
miRNA:   3'- aACCUgCGUCGA---UGAaCugGA-AACGG- -5'
33601 3' -51.6 NC_007605.1 + 108103 0.66 0.982987
Target:  5'- --uGACGguGCUGCgagggaUGGCCU-UGCUg -3'
miRNA:   3'- aacCUGCguCGAUGa-----ACUGGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 109073 0.68 0.956702
Target:  5'- --aGGCGCAGCUuc--GGCCUcgGCCa -3'
miRNA:   3'- aacCUGCGUCGAugaaCUGGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 112746 0.7 0.904697
Target:  5'- -gGGGCGCGGCUGgaUGcCCUcaugcGCCa -3'
miRNA:   3'- aaCCUGCGUCGAUgaACuGGAaa---CGG- -5'
33601 3' -51.6 NC_007605.1 + 117388 0.66 0.982785
Target:  5'- -cGGACGCuacccgaAGCcACUaaUGACCcagGCCa -3'
miRNA:   3'- aaCCUGCG-------UCGaUGA--ACUGGaaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 117557 0.66 0.98968
Target:  5'- -gGGAcuucuucuCGgAGCUGC-UGACCgagGCCg -3'
miRNA:   3'- aaCCU--------GCgUCGAUGaACUGGaaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 117928 0.67 0.970547
Target:  5'- -gGGGCGCGGgUGCcUGGCUgaaccuaGCCg -3'
miRNA:   3'- aaCCUGCGUCgAUGaACUGGaaa----CGG- -5'
33601 3' -51.6 NC_007605.1 + 130461 0.67 0.976127
Target:  5'- cUGGGCuaaGGCcugg-GACCUUUGCCa -3'
miRNA:   3'- aACCUGcg-UCGaugaaCUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 131385 0.71 0.862169
Target:  5'- cUGGGcCGCGGCUGCccccuggaccccuaGGCCUgUGCCa -3'
miRNA:   3'- aACCU-GCGUCGAUGaa------------CUGGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 137805 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 140874 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 143943 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 144399 0.73 0.762421
Target:  5'- gUGGugGCAGa-GCUUGGCCcUggGCCc -3'
miRNA:   3'- aACCugCGUCgaUGAACUGG-AaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 146115 1.09 0.006775
Target:  5'- uUUGGACGCAGCUACUUGACCUUUGCCc -3'
miRNA:   3'- -AACCUGCGUCGAUGAACUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 147012 0.67 0.98089
Target:  5'- -gGGAC-CGGgUGCUggGACCUcgggUGCCc -3'
miRNA:   3'- aaCCUGcGUCgAUGAa-CUGGAa---ACGG- -5'
33601 3' -51.6 NC_007605.1 + 147903 0.68 0.967431
Target:  5'- -cGG-UGCGGCUGCcccgUGACCcguggGCCu -3'
miRNA:   3'- aaCCuGCGUCGAUGa---ACUGGaaa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.