Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33601 | 3' | -51.6 | NC_007605.1 | + | 117557 | 0.66 | 0.98968 |
Target: 5'- -gGGAcuucuucuCGgAGCUGC-UGACCgagGCCg -3' miRNA: 3'- aaCCU--------GCgUCGAUGaACUGGaaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 117388 | 0.66 | 0.982785 |
Target: 5'- -cGGACGCuacccgaAGCcACUaaUGACCcagGCCa -3' miRNA: 3'- aaCCUGCG-------UCGaUGA--ACUGGaaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 112746 | 0.7 | 0.904697 |
Target: 5'- -gGGGCGCGGCUGgaUGcCCUcaugcGCCa -3' miRNA: 3'- aaCCUGCGUCGAUgaACuGGAaa---CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 109073 | 0.68 | 0.956702 |
Target: 5'- --aGGCGCAGCUuc--GGCCUcgGCCa -3' miRNA: 3'- aacCUGCGUCGAugaaCUGGAaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 108103 | 0.66 | 0.982987 |
Target: 5'- --uGACGguGCUGCgagggaUGGCCU-UGCUg -3' miRNA: 3'- aacCUGCguCGAUGa-----ACUGGAaACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 101613 | 0.74 | 0.752479 |
Target: 5'- gUGGAgGCAGCUaacGCUgGugCUcUUGCCa -3' miRNA: 3'- aACCUgCGUCGA---UGAaCugGA-AACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 97793 | 0.7 | 0.898088 |
Target: 5'- aUGGGCGgAGCaACcgaGGCUUUUGCCc -3' miRNA: 3'- aACCUGCgUCGaUGaa-CUGGAAACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 96267 | 0.66 | 0.988242 |
Target: 5'- gUGGGC-CAGCUGC---ACCUUcgaggaggUGCCg -3' miRNA: 3'- aACCUGcGUCGAUGaacUGGAA--------ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 81019 | 0.68 | 0.94834 |
Target: 5'- gUGGcCGguGCUGCcaGAgCCUcUGCCa -3' miRNA: 3'- aACCuGCguCGAUGaaCU-GGAaACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 80196 | 0.68 | 0.956702 |
Target: 5'- aUUGGAgcCGCGGCUACggUGAgcaucCCUaugGCCu -3' miRNA: 3'- -AACCU--GCGUCGAUGa-ACU-----GGAaa-CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 76465 | 0.68 | 0.960515 |
Target: 5'- -aGGAuccagugacccCGCAguGCUGCUUgGACCUggagGCCg -3' miRNA: 3'- aaCCU-----------GCGU--CGAUGAA-CUGGAaa--CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 75997 | 0.69 | 0.922997 |
Target: 5'- -cGGGCGCAGCaggaugguggucUugUUGACCaaggugaGCCg -3' miRNA: 3'- aaCCUGCGUCG------------AugAACUGGaaa----CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 74103 | 0.66 | 0.982987 |
Target: 5'- -gGGACGCAGCcACgccacgcGGCCUcUGgCa -3' miRNA: 3'- aaCCUGCGUCGaUGaa-----CUGGAaACgG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 71956 | 0.68 | 0.96409 |
Target: 5'- -gGGAUGUAGUgcuguCUUGACUg--GCCu -3' miRNA: 3'- aaCCUGCGUCGau---GAACUGGaaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 68276 | 0.66 | 0.984905 |
Target: 5'- -cGGACucgcugGCGGCggcGCUUaGCCUcUGCCg -3' miRNA: 3'- aaCCUG------CGUCGa--UGAAcUGGAaACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 66186 | 0.7 | 0.904697 |
Target: 5'- cUGGuGCGCAGCUAC--GAgCUggGCCu -3' miRNA: 3'- aACC-UGCGUCGAUGaaCUgGAaaCGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 58981 | 0.74 | 0.752479 |
Target: 5'- -aGGACGCAGUUGCU-GACgcaCUggaUGCCg -3' miRNA: 3'- aaCCUGCGUCGAUGAaCUG---GAa--ACGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 58100 | 0.68 | 0.960515 |
Target: 5'- cUUGGACcCuGCUGCgauuuucUGACCUUUacaGCCg -3' miRNA: 3'- -AACCUGcGuCGAUGa------ACUGGAAA---CGG- -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 50455 | 0.73 | 0.781921 |
Target: 5'- gUGGGCaggGCAGCUGCaucuuggGGCCUUUGUg -3' miRNA: 3'- aACCUG---CGUCGAUGaa-----CUGGAAACGg -5' |
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33601 | 3' | -51.6 | NC_007605.1 | + | 49348 | 0.69 | 0.93748 |
Target: 5'- -cGGACagaGCAGaCUguuuuggugaacggGCUggUGGCCUUUGCCu -3' miRNA: 3'- aaCCUG---CGUC-GA--------------UGA--ACUGGAAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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