miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33601 3' -51.6 NC_007605.1 + 171259 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 2385 0.67 0.975607
Target:  5'- uUUGGugGCagGGCUGCUggUGGCagacagcugGCCg -3'
miRNA:   3'- -AACCugCG--UCGAUGA--ACUGgaaa-----CGG- -5'
33601 3' -51.6 NC_007605.1 + 130461 0.67 0.976127
Target:  5'- cUGGGCuaaGGCcugg-GACCUUUGCCa -3'
miRNA:   3'- aACCUGcg-UCGaugaaCUGGAAACGG- -5'
33601 3' -51.6 NC_007605.1 + 4060 0.67 0.98089
Target:  5'- cUGGGCGUgaAGCUgaccuuugGCUcGGCCUccUGCCc -3'
miRNA:   3'- aACCUGCG--UCGA--------UGAaCUGGAa-ACGG- -5'
33601 3' -51.6 NC_007605.1 + 74103 0.66 0.982987
Target:  5'- -gGGACGCAGCcACgccacgcGGCCUcUGgCa -3'
miRNA:   3'- aaCCUGCGUCGaUGaa-----CUGGAaACgG- -5'
33601 3' -51.6 NC_007605.1 + 68276 0.66 0.984905
Target:  5'- -cGGACucgcugGCGGCggcGCUUaGCCUcUGCCg -3'
miRNA:   3'- aaCCUG------CGUCGa--UGAAcUGGAaACGG- -5'
33601 3' -51.6 NC_007605.1 + 169661 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 170199 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 170721 0.66 0.985974
Target:  5'- -cGGGCGCAGCcaUGCgUGACCgugaugaggggGCa -3'
miRNA:   3'- aaCCUGCGUCG--AUGaACUGGaaa--------CGg -5'
33601 3' -51.6 NC_007605.1 + 42337 0.67 0.970547
Target:  5'- cUUGGGCGC-GCg--UUGGCCUggaugGCCu -3'
miRNA:   3'- -AACCUGCGuCGaugAACUGGAaa---CGG- -5'
33601 3' -51.6 NC_007605.1 + 147903 0.68 0.967431
Target:  5'- -cGG-UGCGGCUGCcccgUGACCcguggGCCu -3'
miRNA:   3'- aaCCuGCGUCGAUGa---ACUGGaaa--CGG- -5'
33601 3' -51.6 NC_007605.1 + 149965 0.68 0.967431
Target:  5'- -gGGAgGCAGCU-CUUGGCaCUgcGCg -3'
miRNA:   3'- aaCCUgCGUCGAuGAACUG-GAaaCGg -5'
33601 3' -51.6 NC_007605.1 + 58981 0.74 0.752479
Target:  5'- -aGGACGCAGUUGCU-GACgcaCUggaUGCCg -3'
miRNA:   3'- aaCCUGCGUCGAUGAaCUG---GAa--ACGG- -5'
33601 3' -51.6 NC_007605.1 + 101613 0.74 0.752479
Target:  5'- gUGGAgGCAGCUaacGCUgGugCUcUUGCCa -3'
miRNA:   3'- aACCUgCGUCGA---UGAaCugGA-AACGG- -5'
33601 3' -51.6 NC_007605.1 + 144399 0.73 0.762421
Target:  5'- gUGGugGCAGa-GCUUGGCCcUggGCCc -3'
miRNA:   3'- aACCugCGUCgaUGAACUGG-AaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 50455 0.73 0.781921
Target:  5'- gUGGGCaggGCAGCUGCaucuuggGGCCUUUGUg -3'
miRNA:   3'- aACCUG---CGUCGAUGaa-----CUGGAAACGg -5'
33601 3' -51.6 NC_007605.1 + 66186 0.7 0.904697
Target:  5'- cUGGuGCGCAGCUAC--GAgCUggGCCu -3'
miRNA:   3'- aACC-UGCGUCGAUGaaCUgGAaaCGG- -5'
33601 3' -51.6 NC_007605.1 + 75997 0.69 0.922997
Target:  5'- -cGGGCGCAGCaggaugguggucUugUUGACCaaggugaGCCg -3'
miRNA:   3'- aaCCUGCGUCG------------AugAACUGGaaa----CGG- -5'
33601 3' -51.6 NC_007605.1 + 80196 0.68 0.956702
Target:  5'- aUUGGAgcCGCGGCUACggUGAgcaucCCUaugGCCu -3'
miRNA:   3'- -AACCU--GCGUCGAUGa-ACU-----GGAaa-CGG- -5'
33601 3' -51.6 NC_007605.1 + 71956 0.68 0.96409
Target:  5'- -gGGAUGUAGUgcuguCUUGACUg--GCCu -3'
miRNA:   3'- aaCCUGCGUCGau---GAACUGGaaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.