miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33601 5' -53.6 NC_007605.1 + 4526 0.66 0.971077
Target:  5'- gCAGCGUgGGUGAgGUGCugcagacccUGCGcUCCAUg -3'
miRNA:   3'- gGUCGCGaCUAUU-CACG---------ACGC-AGGUG- -5'
33601 5' -53.6 NC_007605.1 + 67020 0.66 0.957009
Target:  5'- uUCAGCgGCUGcgGAGggcuggGCUGCGccucucuggaagCCACg -3'
miRNA:   3'- -GGUCG-CGACuaUUCa-----CGACGCa-----------GGUG- -5'
33601 5' -53.6 NC_007605.1 + 135080 0.68 0.930834
Target:  5'- uCCGGCGCccUGcgcAGUccaaGCUGCGcCCACa -3'
miRNA:   3'- -GGUCGCG--ACuauUCA----CGACGCaGGUG- -5'
33601 5' -53.6 NC_007605.1 + 95811 0.68 0.929257
Target:  5'- gCGGCGCUacaacuccacGCUGCGUCCAUc -3'
miRNA:   3'- gGUCGCGAcuauuca---CGACGCAGGUG- -5'
33601 5' -53.6 NC_007605.1 + 35037 0.68 0.914069
Target:  5'- -uGGgGgUGGUAGGUGUgaGCGUCCAUc -3'
miRNA:   3'- ggUCgCgACUAUUCACGa-CGCAGGUG- -5'
33601 5' -53.6 NC_007605.1 + 122538 0.69 0.874017
Target:  5'- gCCAGgGuCUGGgccacGUGCUGaaaGUCCACc -3'
miRNA:   3'- -GGUCgC-GACUauu--CACGACg--CAGGUG- -5'
33601 5' -53.6 NC_007605.1 + 20806 0.72 0.77146
Target:  5'- cCgGGgGCUGGcGAG-GCgGCGUCCGCg -3'
miRNA:   3'- -GgUCgCGACUaUUCaCGaCGCAGGUG- -5'
33601 5' -53.6 NC_007605.1 + 25492 0.72 0.736401
Target:  5'- aUCAGCGCUGgaggcacgggggcaaAggucAAGUaGCUGCGUCCAa -3'
miRNA:   3'- -GGUCGCGAC---------------Ua---UUCA-CGACGCAGGUg -5'
33601 5' -53.6 NC_007605.1 + 21216 0.76 0.547468
Target:  5'- gCGGCGUgcgaccaAUGGGUGCUGCGcCCGCg -3'
miRNA:   3'- gGUCGCGac-----UAUUCACGACGCaGGUG- -5'
33601 5' -53.6 NC_007605.1 + 146150 1.11 0.003592
Target:  5'- uCCAGCGCUGAUAAGUGCUGCGUCCACu -3'
miRNA:   3'- -GGUCGCGACUAUUCACGACGCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.