Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33601 | 5' | -53.6 | NC_007605.1 | + | 146150 | 1.11 | 0.003592 |
Target: 5'- uCCAGCGCUGAUAAGUGCUGCGUCCACu -3' miRNA: 3'- -GGUCGCGACUAUUCACGACGCAGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 21216 | 0.76 | 0.547468 |
Target: 5'- gCGGCGUgcgaccaAUGGGUGCUGCGcCCGCg -3' miRNA: 3'- gGUCGCGac-----UAUUCACGACGCaGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 25492 | 0.72 | 0.736401 |
Target: 5'- aUCAGCGCUGgaggcacgggggcaaAggucAAGUaGCUGCGUCCAa -3' miRNA: 3'- -GGUCGCGAC---------------Ua---UUCA-CGACGCAGGUg -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 20806 | 0.72 | 0.77146 |
Target: 5'- cCgGGgGCUGGcGAG-GCgGCGUCCGCg -3' miRNA: 3'- -GgUCgCGACUaUUCaCGaCGCAGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 122538 | 0.69 | 0.874017 |
Target: 5'- gCCAGgGuCUGGgccacGUGCUGaaaGUCCACc -3' miRNA: 3'- -GGUCgC-GACUauu--CACGACg--CAGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 35037 | 0.68 | 0.914069 |
Target: 5'- -uGGgGgUGGUAGGUGUgaGCGUCCAUc -3' miRNA: 3'- ggUCgCgACUAUUCACGa-CGCAGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 95811 | 0.68 | 0.929257 |
Target: 5'- gCGGCGCUacaacuccacGCUGCGUCCAUc -3' miRNA: 3'- gGUCGCGAcuauuca---CGACGCAGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 135080 | 0.68 | 0.930834 |
Target: 5'- uCCGGCGCccUGcgcAGUccaaGCUGCGcCCACa -3' miRNA: 3'- -GGUCGCG--ACuauUCA----CGACGCaGGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 67020 | 0.66 | 0.957009 |
Target: 5'- uUCAGCgGCUGcgGAGggcuggGCUGCGccucucuggaagCCACg -3' miRNA: 3'- -GGUCG-CGACuaUUCa-----CGACGCa-----------GGUG- -5' |
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33601 | 5' | -53.6 | NC_007605.1 | + | 4526 | 0.66 | 0.971077 |
Target: 5'- gCAGCGUgGGUGAgGUGCugcagacccUGCGcUCCAUg -3' miRNA: 3'- gGUCGCGaCUAUU-CACG---------ACGC-AGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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