miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33602 3' -47.3 NC_007605.1 + 126972 0.66 0.999873
Target:  5'- gUGGUCCUGcgcauccacGGCCUUGACc-UGguACAg -3'
miRNA:   3'- -ACUAGGAC---------CUGGAACUGauACuuUGU- -5'
33602 3' -47.3 NC_007605.1 + 95704 0.66 0.999787
Target:  5'- gGGUCaUGGGCUcauGCUGUGggGCAg -3'
miRNA:   3'- aCUAGgACCUGGaacUGAUACuuUGU- -5'
33602 3' -47.3 NC_007605.1 + 124564 0.67 0.999454
Target:  5'- cGAggccUUCUGGGCgUUGGCggccUGAAACAc -3'
miRNA:   3'- aCU----AGGACCUGgAACUGau--ACUUUGU- -5'
33602 3' -47.3 NC_007605.1 + 93158 0.67 0.99932
Target:  5'- aGAcUCUGGGCCcUGAUUAgGAAACu -3'
miRNA:   3'- aCUaGGACCUGGaACUGAUaCUUUGu -5'
33602 3' -47.3 NC_007605.1 + 167915 0.67 0.99932
Target:  5'- cUGGUCCa-GACC-UGACUGUGGgcAACGa -3'
miRNA:   3'- -ACUAGGacCUGGaACUGAUACU--UUGU- -5'
33602 3' -47.3 NC_007605.1 + 11632 0.67 0.99932
Target:  5'- cGGUCCcGGGCCcggGGCggccgGAGGCAg -3'
miRNA:   3'- aCUAGGaCCUGGaa-CUGaua--CUUUGU- -5'
33602 3' -47.3 NC_007605.1 + 148277 0.68 0.999159
Target:  5'- gUGAUCCUGGGuCCUUuggaGACUcaaguGUGAAu-- -3'
miRNA:   3'- -ACUAGGACCU-GGAA----CUGA-----UACUUugu -5'
33602 3' -47.3 NC_007605.1 + 89281 0.69 0.997343
Target:  5'- cUGAUgUUGGaccacgucaguGCCUUGGCUAgggGggGCAc -3'
miRNA:   3'- -ACUAgGACC-----------UGGAACUGAUa--CuuUGU- -5'
33602 3' -47.3 NC_007605.1 + 55013 0.7 0.993035
Target:  5'- --cUCCUGGACCU-GGCcgggGUGGAAUg -3'
miRNA:   3'- acuAGGACCUGGAaCUGa---UACUUUGu -5'
33602 3' -47.3 NC_007605.1 + 64356 0.72 0.975981
Target:  5'- -uGUCCUGGGCCUUGACcacccagaccggggaGAAGCGg -3'
miRNA:   3'- acUAGGACCUGGAACUGaua------------CUUUGU- -5'
33602 3' -47.3 NC_007605.1 + 25303 0.72 0.975177
Target:  5'- ---cCCUGGACaCUgGACUAUGAuGCAu -3'
miRNA:   3'- acuaGGACCUG-GAaCUGAUACUuUGU- -5'
33602 3' -47.3 NC_007605.1 + 45522 0.76 0.900077
Target:  5'- gUGGUUCUGGGCCacaugGACU-UGAAGCAg -3'
miRNA:   3'- -ACUAGGACCUGGaa---CUGAuACUUUGU- -5'
33602 3' -47.3 NC_007605.1 + 99651 0.83 0.580433
Target:  5'- aGAcCCUGGGCCUUGGCUAUGGu--- -3'
miRNA:   3'- aCUaGGACCUGGAACUGAUACUuugu -5'
33602 3' -47.3 NC_007605.1 + 146288 1.1 0.017923
Target:  5'- cUGAUCCUGGACCUUGACUAUGAAACAa -3'
miRNA:   3'- -ACUAGGACCUGGAACUGAUACUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.